SRR3552595_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552595_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	726250
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2763	0.38044750430292595	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1832	0.25225473321858866	No Hit
GCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGC	1110	0.15283993115318417	Illumina PCR Primer Index 5 (95% over 23bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGC	1069	0.14719449225473322	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1067	0.14691910499139416	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1023	0.1408605851979346	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTC	1008	0.13879518072289157	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	902	0.12419965576592083	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCG	861	0.11855421686746986	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGAAC	25	3.8893828E-5	45.0	10
GCGCATC	20	7.03157E-4	45.0	18
TTATCGC	25	3.8893828E-5	45.0	15
ATCGTTC	20	7.03157E-4	45.0	32
ATAACGG	25	3.8893828E-5	45.0	2
CAACTCG	20	7.03157E-4	45.0	15
CGATCCA	20	7.03157E-4	45.0	10
TATCGTG	30	2.1643937E-6	44.999996	37
TCGATAG	70	0.0	41.785713	1
ATCCGGC	65	0.0	41.538464	6
CGTGTAC	180	0.0	41.25	18
TTGTGCG	50	1.0804797E-9	40.5	1
TCGTGTA	185	0.0	40.135136	17
CGACAAT	90	0.0	40.0	20
ATCGGGT	45	1.9266736E-8	40.0	4
TCGACAA	90	0.0	40.0	19
TGCGTAG	45	1.9266736E-8	40.0	1
CATACGA	125	0.0	39.6	18
ACATACG	125	0.0	39.6	17
ACGGGAT	205	0.0	39.512196	5