SRR3552594_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552594_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	786059
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2201	0.2800044271485983	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1995	0.25379774291751633	No Hit
GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	1073	0.13650374844636345	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	922	0.11729399447115293	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	907	0.11538574076500618	No Hit
CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	804	0.10228239864946524	No Hit
CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT	793	0.10088301259829097	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGACAA	30	2.1646229E-6	45.000004	19
CGAACTA	25	3.889677E-5	45.0	16
GGTCGTA	20	7.0319243E-4	45.0	44
CGTACTC	20	7.0319243E-4	45.0	45
TTACGCG	25	3.889677E-5	45.0	1
CCCGATA	20	7.0319243E-4	45.0	21
GCGAATG	65	0.0	41.53846	1
TTAACGG	65	0.0	41.53846	2
GCGATAC	65	0.0	41.53846	9
TCGATGG	45	1.9270374E-8	40.0	2
CTAACGC	170	0.0	39.705883	25
ACGCATT	165	0.0	39.545452	17
TTTAGCG	80	0.0	39.375	1
TTAGCGG	160	0.0	39.375	2
ATGACGC	150	0.0	39.000004	27
TACGCAT	180	0.0	38.75	16
GGTCCGT	35	6.2457693E-6	38.571426	8
AGGGCGT	70	0.0	38.571426	6
ACGAGAT	70	0.0	38.571426	15
TAACGCA	170	0.0	38.382355	26