SRR3552593_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552593_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	978809
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3109	0.3176309167569975	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1877	0.19176366379957682	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1012	0.10339095778645273	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTT	20	7.032772E-4	45.000004	34
CACGCTA	20	7.032772E-4	45.000004	16
CCGTACA	35	1.2116834E-7	45.000004	26
ACTCGTA	20	7.032772E-4	45.000004	32
ACGTATG	20	7.032772E-4	45.000004	32
TACGTCG	20	7.032772E-4	45.000004	1
ATCGTAC	30	2.1651704E-6	44.999996	40
TATTGCG	55	6.002665E-11	40.909092	1
AACGCGA	90	0.0	40.000004	27
CGTTAGG	135	0.0	40.0	2
TACGAAT	165	0.0	39.545456	12
TCGATAG	40	3.457517E-7	39.375004	1
CCCGTAC	40	3.457517E-7	39.375004	25
TCCCGTA	40	3.457517E-7	39.375004	24
CATAACG	40	3.457517E-7	39.375004	1
GCGTATG	75	0.0	39.000004	1
ATACTCG	35	6.247339E-6	38.57143	44
CGTTTTT	2460	0.0	37.774395	1
CGACGCA	30	1.1397982E-4	37.499996	21
CATGACG	30	1.1397982E-4	37.499996	1