SRR3552591_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552591_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1071668
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	1917	0.1788800262767947	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1795	0.16749590358207953	No Hit
CCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	1697	0.1583512804338657	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1657	0.15461878118969682	No Hit
CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGCT	1149	0.10721604078875173	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1111	0.10367016650679127	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACAC	20	7.033071E-4	45.000004	39
GACGTAT	20	7.033071E-4	45.000004	30
GTTCACG	20	7.033071E-4	45.000004	1
TTCGGAT	20	7.033071E-4	45.000004	40
TATCGTG	20	7.033071E-4	45.000004	35
TGTAACG	30	2.1653632E-6	45.000004	1
GTATTAC	35	1.211829E-7	45.0	28
GTATACG	35	1.211829E-7	45.0	1
ACGTATA	25	3.890629E-5	45.0	22
ACGCATT	95	0.0	42.63158	17
ACGGGTA	145	0.0	41.89655	5
TATACGG	65	0.0	41.53846	2
AGTACGG	115	0.0	41.086956	2
TTTAGCG	50	1.0822987E-9	40.5	1
TACGCAT	100	0.0	40.5	16
GGTAACG	85	0.0	39.705883	1
AATACGG	85	0.0	39.705883	2
TAGTAAG	85	0.0	39.705883	1
CATACGA	160	0.0	39.375004	18
CGATCTA	40	3.4579352E-7	39.375004	10