SRR3552589_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552589_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	979971
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	3013	0.307458077841079	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1640	0.16735189102534667	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1504	0.15347392933056184	No Hit
CTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGCT	1466	0.14959626356290137	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1315	0.13418764432825053	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1282	0.13082019774054537	No Hit
CCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	1045	0.10663580861066298	No Hit
TCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	983	0.10030909077921694	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCTA	20	7.0327753E-4	45.000004	17
ACGTTAA	20	7.0327753E-4	45.000004	32
GAATCGT	20	7.0327753E-4	45.000004	43
CGACACG	20	7.0327753E-4	45.000004	41
TCTAGCG	20	7.0327753E-4	45.000004	1
ATCCGAT	20	7.0327753E-4	45.000004	14
CTAGTCC	30	2.1651722E-6	45.000004	16
CGCTAAC	20	7.0327753E-4	45.000004	34
AACGCAT	20	7.0327753E-4	45.000004	23
AACGATC	20	7.0327753E-4	45.000004	42
TATAGCG	20	7.0327753E-4	45.000004	1
TTACGCC	20	7.0327753E-4	45.000004	45
ACGTAAC	20	7.0327753E-4	45.000004	45
GCTCGAT	20	7.0327753E-4	45.000004	27
TAAGACG	20	7.0327753E-4	45.000004	17
AGTAACG	30	2.1651722E-6	45.000004	1
TATCCGA	20	7.0327753E-4	45.000004	37
AGGTAAT	25	3.890383E-5	45.0	6
GTCGATC	25	3.890383E-5	45.0	43
CGTATCT	25	3.890383E-5	45.0	19