##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552589_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 979971 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.759556150130972 31.0 31.0 34.0 30.0 34.0 2 31.881976099292736 33.0 31.0 34.0 30.0 34.0 3 31.944115693219494 33.0 31.0 34.0 30.0 34.0 4 35.56083292260689 37.0 35.0 37.0 33.0 37.0 5 35.39192588352104 37.0 35.0 37.0 33.0 37.0 6 35.40102921412981 37.0 35.0 37.0 33.0 37.0 7 35.77947204560135 37.0 35.0 37.0 35.0 37.0 8 35.609581303936544 37.0 35.0 37.0 35.0 37.0 9 37.34474387507385 39.0 37.0 39.0 34.0 39.0 10 36.864465377036666 39.0 37.0 39.0 32.0 39.0 11 36.778216906418656 39.0 37.0 39.0 32.0 39.0 12 36.62971047102414 39.0 35.0 39.0 32.0 39.0 13 36.41765113457439 39.0 35.0 39.0 32.0 39.0 14 37.54023129255866 39.0 36.0 41.0 32.0 41.0 15 37.70137075484887 40.0 36.0 41.0 33.0 41.0 16 37.77168406003851 40.0 36.0 41.0 33.0 41.0 17 37.75781222097389 40.0 36.0 41.0 33.0 41.0 18 37.735536051577036 39.0 36.0 41.0 33.0 41.0 19 37.713955821141646 39.0 36.0 41.0 33.0 41.0 20 37.65201011050327 39.0 36.0 41.0 33.0 41.0 21 37.57246387903316 39.0 35.0 41.0 33.0 41.0 22 37.59232058907865 39.0 35.0 41.0 33.0 41.0 23 37.485973564523846 39.0 35.0 41.0 33.0 41.0 24 37.48260101574434 39.0 35.0 41.0 33.0 41.0 25 37.31800430829075 39.0 35.0 41.0 32.0 41.0 26 37.30916833253229 39.0 35.0 41.0 32.0 41.0 27 37.0806921837483 39.0 35.0 41.0 32.0 41.0 28 37.12733438030309 39.0 35.0 41.0 32.0 41.0 29 37.108212385876726 39.0 35.0 41.0 32.0 41.0 30 36.95917328165834 39.0 35.0 41.0 31.0 41.0 31 36.94384221573904 39.0 35.0 41.0 31.0 41.0 32 36.83685843764764 39.0 35.0 41.0 31.0 41.0 33 36.71951210801136 39.0 35.0 41.0 31.0 41.0 34 36.65562756448915 39.0 35.0 41.0 31.0 41.0 35 36.517105098008 39.0 35.0 40.0 31.0 41.0 36 36.44170184627912 38.0 35.0 40.0 30.0 41.0 37 36.410751950823034 38.0 35.0 40.0 30.0 41.0 38 36.31805430977039 38.0 35.0 40.0 30.0 41.0 39 36.29661183851359 38.0 35.0 40.0 30.0 41.0 40 36.175600094288505 38.0 35.0 40.0 30.0 41.0 41 36.093009895190775 38.0 35.0 40.0 30.0 41.0 42 36.0399246508315 38.0 35.0 40.0 30.0 41.0 43 35.99590396042332 38.0 35.0 40.0 30.0 41.0 44 35.91000754103948 38.0 35.0 40.0 30.0 41.0 45 35.855923287525854 38.0 35.0 40.0 30.0 41.0 46 35.770060542607894 38.0 35.0 40.0 30.0 41.0 47 35.70634845316851 37.0 35.0 40.0 30.0 41.0 48 35.64284453315455 37.0 34.0 40.0 29.0 41.0 49 35.60061573250637 37.0 34.0 40.0 29.0 41.0 50 35.51274272401938 37.0 34.0 40.0 29.0 41.0 51 34.809083125929234 36.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 14.0 9 40.0 10 72.0 11 64.0 12 64.0 13 55.0 14 45.0 15 89.0 16 102.0 17 221.0 18 346.0 19 634.0 20 978.0 21 1491.0 22 2282.0 23 3199.0 24 4445.0 25 5904.0 26 7707.0 27 9785.0 28 11866.0 29 14695.0 30 18604.0 31 24310.0 32 31432.0 33 43369.0 34 72824.0 35 92156.0 36 90599.0 37 127155.0 38 186291.0 39 229017.0 40 115.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.2215422701284 19.06566622889861 23.536206683667167 12.17658481730582 2 30.985406711014917 24.781141482758162 26.050668846323006 18.182782959903914 3 32.998935682790616 23.883665945216745 26.279451126614973 16.83794724537767 4 27.817149691164328 26.30700296233256 26.267818129311987 19.60802921719112 5 25.051761735806465 29.89915007689003 24.475418150128935 20.57367003717457 6 25.084823938667572 35.73983311751062 22.928637684176365 16.246705259645438 7 82.25478100882577 6.2819205874459545 6.761016397424005 4.7022820063042685 8 83.50920588466393 5.305054945503489 6.134467244438866 5.051271925393711 9 78.25660147085985 7.180110431839309 8.584539746584339 5.978748350716501 10 42.23053539339429 25.405853846695464 15.809651510095707 16.553959249814536 11 31.91992416102109 26.124650627416525 21.0872566637176 20.868168547844785 12 26.94691985783253 23.519573538400625 28.958714084396377 20.574792519370472 13 24.397660747103743 25.980156555653178 28.52706865815417 21.095114039088912 14 20.447747943561595 29.04045119702522 27.895111181861505 22.616689677551683 15 19.549762186840223 26.26638951560811 32.64300678285378 21.540841514697885 16 22.344028547783555 24.62787164109958 29.839250345163276 23.188849465953584 17 21.607986358780003 24.479601947404568 26.382515400965943 27.529896292849482 18 23.259157668951428 24.561134972361426 28.40379970427696 23.77590765441018 19 24.818591570566884 27.15845672984201 25.39013909595284 22.63281260363827 20 25.52636761700091 25.441671233128325 25.83474408936591 23.19721706050485 21 24.426641196525203 26.73517889815107 25.982095388537008 22.85608451678672 22 23.14721558086923 24.961759072462346 24.51643977219734 27.374585574471084 23 22.157900590935853 27.453159328184203 25.416568449474525 24.97237163140542 24 22.41811237271307 25.306259062768184 28.29328622989864 23.982342334620103 25 23.01823217217652 26.220980008592093 26.32945260625059 24.43133521298079 26 21.056031249904333 28.299817035402068 24.93390110523679 25.710250609456807 27 22.41229587406158 27.390912588229654 26.903755315208304 23.29303622250046 28 20.902251189065797 27.162946658625614 28.794525552286753 23.140276600021835 29 22.57046381984773 26.060669142250127 26.286798282806327 25.082068755095815 30 22.681487513406008 28.070830667438116 25.25789028450842 23.989791534647452 31 24.066426455476744 28.141342958107945 23.488858343767316 24.303372242647995 32 25.023801724744914 29.217191120961743 22.357906509478344 23.401100644815 33 23.624882777143405 28.24655015301473 23.02925290646356 25.099314163378306 34 21.91595465580104 27.656838824822366 25.27462547361095 25.152581045765636 35 22.86251327845416 27.310910220812655 24.456233908962613 25.370342591770573 36 24.70603721946874 29.748023155787262 23.581208015339232 21.964731609404765 37 23.821725336770168 28.082157533233126 25.99189159679215 22.104225533204556 38 23.465694392997342 29.436075149162576 24.041935934838886 23.056294523001192 39 25.127172130603864 26.524254289157533 24.501439328306652 23.847134251931944 40 23.765601226975082 26.818956887499734 26.067710166933512 23.34773171859167 41 21.29532404530338 26.906918674124032 25.16309156087272 26.634665719699868 42 22.37198855884511 27.22090755746854 25.557797118486157 24.849306765200193 43 23.65325096354892 24.692975608461882 26.99212527717657 24.661648150812628 44 23.23925912093317 25.370444635606564 26.270165137539784 25.12013110592048 45 23.53334945625942 25.938828802076795 25.089415911287173 25.438405830376613 46 23.559880853617095 27.481323426917736 25.42840553444949 23.53039018501568 47 22.58964806101405 27.070188811709734 26.50047807537162 23.839685051904596 48 21.974017598479957 26.092608862915327 26.94140949068901 24.991964047915705 49 23.538553691894965 24.47215274737722 27.95409251906434 24.035201041663477 50 21.55410721337672 25.867602204555034 27.347646001769437 25.230644580298804 51 21.320630916629167 25.54065375403966 25.928114199297735 27.21060113003344 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1714.0 1 1985.0 2 2256.0 3 2877.5 4 3499.0 5 2557.5 6 1616.0 7 1588.0 8 1560.0 9 1633.5 10 1707.0 11 1719.5 12 1732.0 13 1766.0 14 1800.0 15 1896.5 16 1993.0 17 2026.0 18 2059.0 19 2039.5 20 2020.0 21 2356.5 22 2693.0 23 2733.5 24 2774.0 25 4161.0 26 6519.0 27 7490.0 28 8810.0 29 10130.0 30 11434.0 31 12738.0 32 13665.5 33 14593.0 34 17761.5 35 20930.0 36 21486.5 37 22043.0 38 25583.5 39 29124.0 40 35552.5 41 41981.0 42 49525.0 43 57069.0 44 66775.0 45 76481.0 46 81201.5 47 85922.0 48 89286.0 49 92650.0 50 82711.5 51 72773.0 52 67524.0 53 62275.0 54 58891.0 55 55507.0 56 51637.0 57 47767.0 58 45907.0 59 44047.0 60 42748.0 61 41449.0 62 39902.5 63 38356.0 64 34183.5 65 30011.0 66 26311.5 67 22612.0 68 20309.0 69 18006.0 70 16155.0 71 14304.0 72 12163.0 73 10022.0 74 8879.0 75 6253.5 76 4771.0 77 3787.5 78 2804.0 79 2225.0 80 1646.0 81 1373.5 82 1101.0 83 710.5 84 320.0 85 255.0 86 190.0 87 122.5 88 55.0 89 71.0 90 87.0 91 45.5 92 4.0 93 4.5 94 5.0 95 2.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 979971.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.242431711550942 #Duplication Level Percentage of deduplicated Percentage of total 1 73.62082208351023 17.111269298242284 2 10.817734110310342 5.028608926652069 3 4.2972772837230995 2.9963752143759983 4 2.172626791558001 2.019885193498915 5 1.2416515417548746 1.442950058438981 6 0.8040208315523711 1.1212439563212233 7 0.5647101010555622 0.9187665172424855 8 0.41352389373419135 0.7689040688969273 9 0.31410602489424316 0.6570529050412052 >10 3.3385760835913354 19.26278793899551 >50 1.9306341071879827 32.42096448787745 >100 0.476355769366744 14.235778058795518 >500 0.004865286409502493 0.8573602424219892 >1k 0.0030960913515015857 1.1580531331994852 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC 3013 0.307458077841079 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1640 0.16735189102534667 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1504 0.15347392933056184 No Hit CTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGCT 1466 0.14959626356290137 No Hit ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC 1315 0.13418764432825053 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1282 0.13082019774054537 No Hit CCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC 1045 0.10663580861066298 No Hit TCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC 983 0.10030909077921694 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.0204383599106504E-4 0.0 0.0 0.16092312935790956 0.0 2 1.0204383599106504E-4 0.0 0.0 0.7970644029262091 0.0 3 1.0204383599106504E-4 0.0 0.0 1.0680928313184779 0.0 4 1.0204383599106504E-4 0.0 0.0 1.435450640886312 0.0 5 1.0204383599106504E-4 0.0 0.0 2.418847088332206 0.0 6 1.0204383599106504E-4 0.0 0.0 3.1620323458551325 0.0 7 1.0204383599106504E-4 0.0 0.0 3.8187864742936273 0.0 8 1.0204383599106504E-4 0.0 0.0 4.971371601812707 0.0 9 1.0204383599106504E-4 0.0 0.0 5.499448453066468 0.0 10 1.0204383599106504E-4 0.0 0.0 6.663666577888529 0.0 11 1.0204383599106504E-4 0.0 0.0 8.013604484214328 0.0 12 1.0204383599106504E-4 0.0 0.0 9.098534548471333 0.0 13 1.0204383599106504E-4 0.0 0.0 9.509567119843343 0.0 14 1.0204383599106504E-4 0.0 0.0 9.667020758777555 0.0 15 1.0204383599106504E-4 0.0 0.0 9.943661598149333 0.0 16 1.0204383599106504E-4 0.0 0.0 10.561537025075232 0.0 17 1.0204383599106504E-4 0.0 0.0 11.37870406369168 0.0 18 1.0204383599106504E-4 0.0 0.0 12.316588960285559 0.0 19 1.0204383599106504E-4 0.0 0.0 12.78609264968045 0.0 20 1.0204383599106504E-4 0.0 0.0 13.2354937033851 2.0408767198213008E-4 21 8.163506879285203E-4 0.0 0.0 13.777856691677611 2.0408767198213008E-4 22 8.163506879285203E-4 0.0 0.0 14.340118227988379 2.0408767198213008E-4 23 8.163506879285203E-4 0.0 0.0 14.925033495889164 2.0408767198213008E-4 24 0.0014286137038749106 0.0 0.0 15.383822582504992 2.0408767198213008E-4 25 0.0025510958997766262 0.0 0.0 15.77648726339861 2.0408767198213008E-4 26 0.0025510958997766262 0.0 0.0 16.1443552921464 2.0408767198213008E-4 27 0.0025510958997766262 0.0 0.0 16.51916230174158 2.0408767198213008E-4 28 0.0025510958997766262 0.0 0.0 16.89458157435271 2.0408767198213008E-4 29 0.0025510958997766262 0.0 0.0 17.291634140193946 2.0408767198213008E-4 30 0.0025510958997766262 0.0 0.0 17.74348424596238 2.0408767198213008E-4 31 0.0025510958997766262 0.0 0.0 18.155945431038266 2.0408767198213008E-4 32 0.0026531397357676912 0.0 0.0 18.54463040232823 2.0408767198213008E-4 33 0.0026531397357676912 0.0 0.0 18.953009833964476 2.0408767198213008E-4 34 0.0026531397357676912 0.0 0.0 19.33281699152322 2.0408767198213008E-4 35 0.0026531397357676912 0.0 0.0 19.77864651096818 2.0408767198213008E-4 36 0.0026531397357676912 0.0 0.0 20.173862287761576 2.0408767198213008E-4 37 0.0026531397357676912 0.0 0.0 20.54968973571667 2.0408767198213008E-4 38 0.0026531397357676912 0.0 0.0 20.930007112455367 2.0408767198213008E-4 39 0.0027551835717587563 0.0 0.0 21.308079524802263 2.0408767198213008E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACCTA 20 7.0327753E-4 45.000004 17 ACGTTAA 20 7.0327753E-4 45.000004 32 GAATCGT 20 7.0327753E-4 45.000004 43 CGACACG 20 7.0327753E-4 45.000004 41 TCTAGCG 20 7.0327753E-4 45.000004 1 ATCCGAT 20 7.0327753E-4 45.000004 14 CTAGTCC 30 2.1651722E-6 45.000004 16 CGCTAAC 20 7.0327753E-4 45.000004 34 AACGCAT 20 7.0327753E-4 45.000004 23 AACGATC 20 7.0327753E-4 45.000004 42 TATAGCG 20 7.0327753E-4 45.000004 1 TTACGCC 20 7.0327753E-4 45.000004 45 ACGTAAC 20 7.0327753E-4 45.000004 45 GCTCGAT 20 7.0327753E-4 45.000004 27 TAAGACG 20 7.0327753E-4 45.000004 17 AGTAACG 30 2.1651722E-6 45.000004 1 TATCCGA 20 7.0327753E-4 45.000004 37 AGGTAAT 25 3.890383E-5 45.0 6 GTCGATC 25 3.890383E-5 45.0 43 CGTATCT 25 3.890383E-5 45.0 19 >>END_MODULE