SRR3552586_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552586_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1046418
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCG	10860	1.0378261841826115	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGC	9364	0.8948622825677692	No Hit
GAATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC	9095	0.8691555382265977	No Hit
GCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	5920	0.5657395037164881	No Hit
CCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	2776	0.2652859564724613	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCT	2756	0.263374674365311	No Hit
CTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT	2399	0.22925828875267817	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATGCCTGTT	2019	0.19294392871682253	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1945	0.18587218492036642	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTC	1839	0.17574238975246986	No Hit
GAACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCT	1747	0.1669504920595785	No Hit
TCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	1743	0.16656823563814843	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTA	1712	0.16360574837206546	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1698	0.16226785089706028	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1307	0.12490228570227194	No Hit
ACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	1072	0.10244472094325593	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCACG	45	3.8562575E-10	45.000004	1
CGATCGA	155	0.0	45.000004	41
ATCACGC	20	7.0329965E-4	45.0	42
CCCACGT	20	7.0329965E-4	45.0	17
CCCGTTA	20	7.0329965E-4	45.0	16
TCTACGT	20	7.0329965E-4	45.0	35
ACGTCGT	20	7.0329965E-4	45.0	37
CGTAATA	20	7.0329965E-4	45.0	22
ATGCGTA	20	7.0329965E-4	45.0	20
AATTACG	20	7.0329965E-4	45.0	1
ACGTAAG	20	7.0329965E-4	45.0	1
CGGTACG	20	7.0329965E-4	45.0	2
AGTACGA	20	7.0329965E-4	45.0	12
TAGTACG	35	1.2117926E-7	45.0	1
ATTAGCG	50	2.1827873E-11	44.999996	1
ATAGCGC	25	3.8905666E-5	44.999996	12
TATTGCG	25	3.8905666E-5	44.999996	1
CATCGAT	25	3.8905666E-5	44.999996	21
TCGCGGA	50	2.1827873E-11	44.999996	15
TCAACGT	30	2.165314E-6	44.999996	38