##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552586_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1046418 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.60565376360116 31.0 31.0 34.0 30.0 34.0 2 31.74007327855599 31.0 31.0 34.0 30.0 34.0 3 31.801123451622583 33.0 31.0 34.0 30.0 34.0 4 35.476550479827374 37.0 35.0 37.0 33.0 37.0 5 35.27284221028308 37.0 35.0 37.0 33.0 37.0 6 35.26844530579558 37.0 35.0 37.0 32.0 37.0 7 35.6782633708518 37.0 35.0 37.0 35.0 37.0 8 35.36880195103677 37.0 35.0 37.0 33.0 37.0 9 37.15901771567385 39.0 37.0 39.0 34.0 39.0 10 36.69841879631275 39.0 37.0 39.0 32.0 39.0 11 36.60475259408764 39.0 35.0 39.0 32.0 39.0 12 36.46161667708316 38.0 35.0 39.0 32.0 39.0 13 36.19019072684147 38.0 35.0 39.0 32.0 39.0 14 37.2438853307187 39.0 36.0 41.0 32.0 41.0 15 37.36199587545321 39.0 36.0 41.0 32.0 41.0 16 37.50582080965733 39.0 36.0 41.0 32.0 41.0 17 37.422559627223535 39.0 36.0 41.0 32.0 41.0 18 37.440480763901235 39.0 36.0 41.0 32.0 41.0 19 37.418624297364914 39.0 36.0 41.0 32.0 41.0 20 37.25097905425939 39.0 35.0 41.0 32.0 41.0 21 37.22816981359266 39.0 35.0 41.0 32.0 41.0 22 37.25368065151785 39.0 35.0 41.0 32.0 41.0 23 37.09310906349088 39.0 35.0 41.0 32.0 41.0 24 37.13015353329167 39.0 35.0 41.0 32.0 41.0 25 37.03855629394754 39.0 35.0 41.0 31.0 41.0 26 37.00474666911311 39.0 35.0 41.0 31.0 41.0 27 36.73915204058034 39.0 35.0 40.0 31.0 41.0 28 36.77111536689927 39.0 35.0 40.0 31.0 41.0 29 36.733068429633285 39.0 35.0 40.0 31.0 41.0 30 36.65552675890514 39.0 35.0 40.0 31.0 41.0 31 36.67188255553708 39.0 35.0 40.0 31.0 41.0 32 36.46999669348195 38.0 35.0 40.0 30.0 41.0 33 36.39286881533001 38.0 35.0 40.0 30.0 41.0 34 36.31043426240757 38.0 35.0 40.0 30.0 41.0 35 36.23440728274934 38.0 35.0 40.0 30.0 41.0 36 36.154978220940386 38.0 35.0 40.0 30.0 41.0 37 36.08845891412418 38.0 35.0 40.0 30.0 41.0 38 36.046207156222465 38.0 35.0 40.0 30.0 41.0 39 35.97761028575579 38.0 35.0 40.0 30.0 41.0 40 35.96505794051708 38.0 35.0 40.0 30.0 41.0 41 35.79136635646558 38.0 35.0 40.0 29.0 41.0 42 35.76973637685896 38.0 35.0 40.0 29.0 41.0 43 35.68498152745843 38.0 35.0 40.0 29.0 41.0 44 35.72288798548955 38.0 35.0 40.0 29.0 41.0 45 35.68003895192934 38.0 35.0 40.0 29.0 41.0 46 35.562056463096006 38.0 34.0 40.0 29.0 41.0 47 35.41688694192952 37.0 34.0 40.0 29.0 41.0 48 35.41044592122842 37.0 34.0 40.0 29.0 41.0 49 35.40588369083865 37.0 34.0 40.0 29.0 41.0 50 35.2975187735685 37.0 34.0 40.0 28.0 41.0 51 34.644154630367595 36.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 7.0 9 33.0 10 35.0 11 46.0 12 38.0 13 45.0 14 47.0 15 75.0 16 122.0 17 202.0 18 357.0 19 683.0 20 1212.0 21 2205.0 22 3577.0 23 5185.0 24 6777.0 25 8006.0 26 9627.0 27 11666.0 28 13669.0 29 17077.0 30 21685.0 31 28371.0 32 37017.0 33 50209.0 34 80937.0 35 100871.0 36 97007.0 37 132332.0 38 195318.0 39 221897.0 40 83.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.10423368099555 17.954106294043108 23.793837644230127 12.147822380731219 2 28.499700884350233 28.20708359374552 25.234466532494665 18.058748989409587 3 29.732477843462174 28.700863326127802 25.475957026733102 16.090701803676925 4 27.50707652200172 24.681819311212156 29.154792826576 18.656311340210127 5 26.953855916087072 29.101850312207933 23.52988958523267 20.414404186472325 6 23.47723376318068 36.93848920794558 24.290675427983846 15.293601600889891 7 77.39402418536379 5.516629109973261 12.135112354718668 4.9542343499442865 8 76.84663298987594 8.572100250569084 8.386323629754076 6.194943129800902 9 71.84987261304757 6.820314635260479 10.134382244953738 11.195430506738226 10 42.59865560416583 23.257054064436964 17.467398305457284 16.67689202593992 11 32.881028422676216 24.61597564262083 22.26290067640274 20.24009525830022 12 26.75995634631667 21.63017073483063 29.002176950320045 22.607695968532653 13 24.39713384135212 24.705232517024744 31.380289712141803 19.517343929481335 14 20.43781739228492 29.749105997794377 27.629589705070057 22.183486904850643 15 17.791934007251403 25.033399654822453 35.432207779300434 21.742458558625714 16 20.412110647943745 24.279494427657017 30.304333449921543 25.004061474477695 17 20.019246610819003 24.993167166466936 28.85663281786055 26.130953404853507 18 22.726768843808117 23.37985393982137 28.904510434644664 24.98886678172585 19 22.809527359047724 26.469919286556614 25.553650644388764 25.1669027100069 20 25.16413135095153 25.0861510409798 28.17096036192038 21.57875724614829 21 22.878237950799775 28.601094400134553 27.142881716484236 21.377785932581435 22 21.07303200059632 23.97130018787903 27.95909474034277 26.996573071181878 23 21.468667396776432 28.06134833307531 26.67394865149491 23.79603561865335 24 21.42528129294412 25.124185554912092 28.59392709223274 24.856606059911048 25 20.51436424067629 29.602032839649166 25.92205027054198 23.961552649132564 26 20.04772471421554 27.03546766206239 28.05207861485563 24.864729008866437 27 22.86103641183542 26.340047667375753 26.7558470897863 24.043068831002525 28 20.000802738485003 27.097966586966205 29.166833903851042 23.734396770697753 29 22.47849329808929 25.832793396138065 26.71399001163971 24.974723294132936 30 21.292542750602532 27.398611262420946 28.20880374764196 23.100042239334567 31 25.62608823624976 25.348092253764747 23.227715884092206 25.798103625893287 32 25.42349233289183 27.1640969478736 23.877551800523307 23.53485891871126 33 23.351949221056977 24.145704680156495 24.272804940281993 28.229541158504535 34 22.202599725922145 25.612327005078278 26.492185723104917 25.69288754589466 35 22.640952277197066 23.333983169249763 27.432823212138935 26.592241341414237 36 24.22091363107286 26.26063389582366 26.489892184576334 23.028560288527146 37 22.854824744987184 24.379263353650263 29.272145547955024 23.49376635340753 38 23.38262529887674 25.243736250714342 24.236012759719348 27.13762569068957 39 22.67076827806861 23.891121903484073 27.97753861267677 25.460571205770542 40 24.34180222435012 22.43740073278556 28.12948554019522 25.091311502669107 41 20.735881836895008 23.447131069993063 29.306357497673012 26.510629595438918 42 23.637781460181305 22.64888409794174 29.835782641353646 23.877551800523307 43 23.81868431162308 22.593170224518307 28.29442918604229 25.29371627781632 44 23.079495956682702 22.14554795502371 28.676685607472347 26.09827048082124 45 22.817841436213826 21.910555819949582 26.566821289389136 28.70478145444746 46 24.78961562205543 24.653245643710257 26.269999178148694 24.28713955608562 47 19.82859622063076 24.039532959104296 32.15216099111445 23.97970982915049 48 22.638085354036342 22.96768595341441 28.142004437997052 26.252224254552196 49 22.244934624595526 21.336502239066988 31.917933368883176 24.500629767454306 50 21.864971741694045 21.698499070161255 29.523956965572072 26.912572222572624 51 21.550183578646394 22.122325877421833 26.56930595612843 29.758184587803342 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1675.0 1 1856.5 2 2038.0 3 2853.0 4 3668.0 5 2699.5 6 1731.0 7 1766.5 8 1802.0 9 1897.5 10 1993.0 11 1982.5 12 1972.0 13 2034.0 14 2096.0 15 2092.0 16 2088.0 17 2187.0 18 2286.0 19 2325.0 20 2364.0 21 2465.0 22 2566.0 23 3144.0 24 3722.0 25 4215.5 26 5786.0 27 6863.0 28 7598.5 29 8334.0 30 10010.5 31 11687.0 32 12732.5 33 13778.0 34 17170.0 35 20562.0 36 22358.5 37 24155.0 38 26129.5 39 28104.0 40 32004.0 41 35904.0 42 42718.0 43 49532.0 44 58592.0 45 67652.0 46 95133.5 47 122615.0 48 115907.5 49 109200.0 50 107543.5 51 105887.0 52 92850.0 53 79813.0 54 71116.5 55 62420.0 56 58894.5 57 55369.0 58 49601.5 59 43834.0 60 40747.0 61 37660.0 62 36684.5 63 35709.0 64 30651.0 65 25593.0 66 22269.0 67 18945.0 68 16461.0 69 13977.0 70 12599.5 71 11222.0 72 10097.0 73 8972.0 74 7405.0 75 4797.5 76 3757.0 77 2982.0 78 2207.0 79 1623.0 80 1039.0 81 864.5 82 690.0 83 494.0 84 298.0 85 158.5 86 19.0 87 44.0 88 69.0 89 35.0 90 1.0 91 2.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1046418.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.484676929019745 #Duplication Level Percentage of deduplicated Percentage of total 1 72.35072487192215 16.99133399197485 2 11.469009221875769 5.386919525434012 3 4.622356404431026 3.256636404265439 4 2.3567264657117213 2.2138783862924125 5 1.3918532418984986 1.6343611859297502 6 0.9357548318580353 1.318553994657309 7 0.6148397043438876 1.0107518273755152 8 0.4900872494456283 0.9207632576209993 9 0.3403605748654505 0.719393232608149 >10 3.3167193916137894 18.717806597215585 >50 1.6930331591532832 28.824218515920524 >100 0.4070344150489306 12.645369004614324 >500 0.004928771927938615 0.7410933214015062 >1k 0.004928771927938615 2.2198074457129846 >5k 0.0012321929819846538 2.351570230697295 >10k+ 4.1073099399488455E-4 1.0475430782793644 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCG 10860 1.0378261841826115 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGC 9364 0.8948622825677692 No Hit GAATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC 9095 0.8691555382265977 No Hit GCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC 5920 0.5657395037164881 No Hit CCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC 2776 0.2652859564724613 No Hit GAATGACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCT 2756 0.263374674365311 No Hit CTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT 2399 0.22925828875267817 Illumina Single End Adapter 2 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATGCCTGTT 2019 0.19294392871682253 No Hit ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC 1945 0.18587218492036642 No Hit GAATGATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTC 1839 0.17574238975246986 No Hit GAACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCT 1747 0.1669504920595785 No Hit TCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC 1743 0.16656823563814843 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTA 1712 0.16360574837206546 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1698 0.16226785089706028 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1307 0.12490228570227194 No Hit ACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC 1072 0.10244472094325593 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.556410535751488E-5 0.0 0.0 0.2434973404509479 0.0 2 9.556410535751488E-5 0.0 0.0 1.406894759073334 0.0 3 1.9112821071502975E-4 0.0 0.0 1.7998543603034352 0.0 4 1.9112821071502975E-4 0.0 0.0 2.4386048405130647 0.0 5 1.9112821071502975E-4 0.0 0.0 4.708634599175473 0.0 6 1.9112821071502975E-4 0.0 0.0 5.715975833749037 0.0 7 1.9112821071502975E-4 0.0 0.0 6.893612304069693 0.0 8 1.9112821071502975E-4 0.0 0.0 8.463730555093662 0.0 9 1.9112821071502975E-4 0.0 0.0 9.038739777029829 0.0 10 1.9112821071502975E-4 0.0 0.0 11.389521204719339 0.0 11 1.9112821071502975E-4 0.0 0.0 12.89341353073055 0.0 12 1.9112821071502975E-4 0.0 0.0 15.04112123453534 0.0 13 1.9112821071502975E-4 0.0 0.0 15.567870583265961 0.0 14 1.9112821071502975E-4 0.0 0.0 15.786234564007882 0.0 15 1.9112821071502975E-4 0.0 0.0 16.30935247673492 0.0 16 1.9112821071502975E-4 0.0 0.0 17.062015370530705 0.0 17 1.9112821071502975E-4 0.0 0.0 17.959935704469917 0.0 18 1.9112821071502975E-4 0.0 0.0 19.001297760550756 9.556410535751488E-5 19 2.866923160725446E-4 0.0 0.0 19.766575116253733 1.9112821071502975E-4 20 2.866923160725446E-4 0.0 0.0 20.31281954247729 1.9112821071502975E-4 21 2.866923160725446E-4 0.0 0.0 20.92299635518502 1.9112821071502975E-4 22 3.822564214300595E-4 0.0 0.0 21.56375368160716 1.9112821071502975E-4 23 3.822564214300595E-4 0.0 0.0 22.16007369903805 1.9112821071502975E-4 24 3.822564214300595E-4 0.0 0.0 22.635218430875614 1.9112821071502975E-4 25 3.822564214300595E-4 0.0 0.0 23.076246777100547 1.9112821071502975E-4 26 3.822564214300595E-4 0.0 0.0 23.453916121473444 1.9112821071502975E-4 27 3.822564214300595E-4 0.0 0.0 23.881565492948326 1.9112821071502975E-4 28 5.733846321450892E-4 0.0 0.0 24.297938299991017 1.9112821071502975E-4 29 5.733846321450892E-4 0.0 0.0 24.721765107251596 1.9112821071502975E-4 30 5.733846321450892E-4 0.0 0.0 25.214875890896373 1.9112821071502975E-4 31 5.733846321450892E-4 0.0 0.0 25.63898939047302 1.9112821071502975E-4 32 5.733846321450892E-4 0.0 0.0 26.12091917379097 1.9112821071502975E-4 33 5.733846321450892E-4 0.0 0.0 26.520281570080027 1.9112821071502975E-4 34 5.733846321450892E-4 0.0 0.0 26.909514171201184 1.9112821071502975E-4 35 5.733846321450892E-4 0.0 0.0 27.349013491740394 1.9112821071502975E-4 36 5.733846321450892E-4 0.0 0.0 27.752389580454466 1.9112821071502975E-4 37 5.733846321450892E-4 0.0 0.0 28.17210713118467 1.9112821071502975E-4 38 5.733846321450892E-4 0.0 0.0 28.572138476211226 1.9112821071502975E-4 39 5.733846321450892E-4 0.0 0.0 28.989180231991423 1.9112821071502975E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGCACG 45 3.8562575E-10 45.000004 1 CGATCGA 155 0.0 45.000004 41 ATCACGC 20 7.0329965E-4 45.0 42 CCCACGT 20 7.0329965E-4 45.0 17 CCCGTTA 20 7.0329965E-4 45.0 16 TCTACGT 20 7.0329965E-4 45.0 35 ACGTCGT 20 7.0329965E-4 45.0 37 CGTAATA 20 7.0329965E-4 45.0 22 ATGCGTA 20 7.0329965E-4 45.0 20 AATTACG 20 7.0329965E-4 45.0 1 ACGTAAG 20 7.0329965E-4 45.0 1 CGGTACG 20 7.0329965E-4 45.0 2 AGTACGA 20 7.0329965E-4 45.0 12 TAGTACG 35 1.2117926E-7 45.0 1 ATTAGCG 50 2.1827873E-11 44.999996 1 ATAGCGC 25 3.8905666E-5 44.999996 12 TATTGCG 25 3.8905666E-5 44.999996 1 CATCGAT 25 3.8905666E-5 44.999996 21 TCGCGGA 50 2.1827873E-11 44.999996 15 TCAACGT 30 2.165314E-6 44.999996 38 >>END_MODULE