SRR3552585_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552585_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	714817
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	2932	0.4101749119005284	No Hit
CTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGCT	1419	0.1985123465166609	No Hit
CCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	1359	0.19011858979291202	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1190	0.16647617502101938	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1146	0.16032075342360352	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1084	0.15164720480906302	No Hit
TCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	1054	0.14745032644718858	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCC	762	0.10660071039161072	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	730	0.10212404013894465	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGGAT	25	3.8893195E-5	45.000004	18
CGTGATA	25	3.8893195E-5	45.000004	39
TCTAGTA	25	3.8893195E-5	45.000004	19
CGTTACT	25	3.8893195E-5	45.000004	19
TGCGAAC	30	2.1643446E-6	45.000004	33
CGGTATG	25	3.8893195E-5	45.000004	6
GTAAGCG	25	3.8893195E-5	45.000004	1
TATCGCG	60	0.0	45.000004	1
CAATACG	30	2.1643446E-6	45.000004	1
ACTATCG	20	7.0314953E-4	45.0	44
GATACGA	20	7.0314953E-4	45.0	11
CGAGTTA	20	7.0314953E-4	45.0	38
CGTTCTA	20	7.0314953E-4	45.0	27
TCGATAT	20	7.0314953E-4	45.0	16
CTACGAT	20	7.0314953E-4	45.0	35
GTCGTAC	20	7.0314953E-4	45.0	18
TATTACG	20	7.0314953E-4	45.0	1
CGAATCG	20	7.0314953E-4	45.0	43
TTTATCG	20	7.0314953E-4	45.0	1
CCGCGAA	20	7.0314953E-4	45.0	40