##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552585_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 714817 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.664786931480364 31.0 31.0 34.0 30.0 34.0 2 31.810168196895148 33.0 31.0 34.0 30.0 34.0 3 31.84854165471722 33.0 31.0 34.0 30.0 34.0 4 35.503361000088134 37.0 35.0 37.0 33.0 37.0 5 35.32112694577773 37.0 35.0 37.0 33.0 37.0 6 35.327213818361905 37.0 35.0 37.0 32.0 37.0 7 35.726604151831864 37.0 35.0 37.0 35.0 37.0 8 35.5663155744757 37.0 35.0 37.0 35.0 37.0 9 37.2752047027421 39.0 37.0 39.0 34.0 39.0 10 36.779894714311496 39.0 37.0 39.0 32.0 39.0 11 36.71294611068287 39.0 35.0 39.0 32.0 39.0 12 36.560928181618515 39.0 35.0 39.0 32.0 39.0 13 36.32642760314878 39.0 35.0 39.0 32.0 39.0 14 37.38835813921605 39.0 36.0 41.0 32.0 41.0 15 37.55554358668023 39.0 36.0 41.0 32.0 41.0 16 37.61995867473773 39.0 36.0 41.0 33.0 41.0 17 37.62061478672164 39.0 36.0 41.0 33.0 41.0 18 37.605305973416975 39.0 36.0 41.0 33.0 41.0 19 37.57932449843806 39.0 36.0 41.0 33.0 41.0 20 37.49336823270851 39.0 35.0 41.0 32.0 41.0 21 37.40600461376828 39.0 35.0 41.0 32.0 41.0 22 37.431514639411205 39.0 35.0 41.0 32.0 41.0 23 37.32919474494871 39.0 35.0 41.0 32.0 41.0 24 37.31292204858027 39.0 35.0 41.0 32.0 41.0 25 37.15629314915566 39.0 35.0 41.0 32.0 41.0 26 37.14348847327358 39.0 35.0 41.0 32.0 41.0 27 36.92334261776091 39.0 35.0 41.0 31.0 41.0 28 36.96411808896543 39.0 35.0 41.0 31.0 41.0 29 36.94432001477301 39.0 35.0 41.0 31.0 41.0 30 36.842085456837204 39.0 35.0 40.0 31.0 41.0 31 36.80067625700004 39.0 35.0 40.0 31.0 41.0 32 36.69132519232195 39.0 35.0 40.0 31.0 41.0 33 36.58077382043236 39.0 35.0 40.0 31.0 41.0 34 36.51211708731046 39.0 35.0 40.0 30.0 41.0 35 36.389470311981945 38.0 35.0 40.0 30.0 41.0 36 36.31535204115179 38.0 35.0 40.0 30.0 41.0 37 36.24795297257899 38.0 35.0 40.0 30.0 41.0 38 36.173020507346635 38.0 35.0 40.0 30.0 41.0 39 36.147011053178645 38.0 35.0 40.0 30.0 41.0 40 36.003391077716394 38.0 35.0 40.0 30.0 41.0 41 35.918523202442024 38.0 35.0 40.0 30.0 41.0 42 35.89482203137307 38.0 35.0 40.0 30.0 41.0 43 35.885332889396864 38.0 35.0 40.0 30.0 41.0 44 35.82266650065681 38.0 35.0 40.0 30.0 41.0 45 35.797258599054025 38.0 35.0 40.0 30.0 41.0 46 35.673312190392785 38.0 34.0 40.0 29.0 41.0 47 35.5645626782799 37.0 34.0 40.0 29.0 41.0 48 35.514324645328806 37.0 34.0 40.0 29.0 41.0 49 35.48999813938393 37.0 34.0 40.0 29.0 41.0 50 35.42411274494032 37.0 34.0 40.0 29.0 41.0 51 34.72925797791603 36.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 9.0 9 27.0 10 40.0 11 32.0 12 27.0 13 31.0 14 42.0 15 46.0 16 91.0 17 174.0 18 276.0 19 468.0 20 719.0 21 1150.0 22 1670.0 23 2387.0 24 3388.0 25 4587.0 26 6160.0 27 7649.0 28 9380.0 29 11533.0 30 14614.0 31 18586.0 32 24397.0 33 33315.0 34 54356.0 35 69168.0 36 66188.0 37 92092.0 38 135761.0 39 156378.0 40 76.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.49714682219365 19.656639391620512 23.704248779757616 13.141965006428219 2 31.47854625729383 23.97089045168204 25.87011780637562 18.68044548464852 3 32.19075651530392 24.46220501191214 26.87541006998994 16.471628402794003 4 29.21391069322638 27.078958670540853 24.822017383470175 18.885113252762594 5 24.00362610290466 29.931856684997697 24.839644272590046 21.224872939507595 6 24.72213167845756 35.724108408166 23.967812740883332 15.5859471724931 7 81.14734260656923 6.310985888695988 7.754991837071586 4.786679667663192 8 81.79562041753344 4.888523915911345 7.473381298989812 5.842474367565405 9 76.75782752788476 7.192610136580411 9.91610440154613 6.1334579339887 10 40.6744663319423 25.446372987771692 16.714627659946533 17.16453302033947 11 31.189381338160675 26.563582007702667 22.015704718830133 20.231331935306518 12 27.515154228285 22.847526010153647 29.31533525363834 20.32198450792301 13 23.753492152536943 26.60834871022933 29.69809056024129 19.940068576992434 14 20.30155969989522 29.80007470443484 27.70317437889698 22.195191216772965 15 18.78760577882171 26.39528718539151 33.81424896162235 21.002858074164436 16 20.88142839356087 24.350148359650092 32.63632510138959 22.13209814539945 17 21.102463987286256 24.89937984127406 27.132398921682054 26.865757249757632 18 22.6252313529197 24.817121025381322 28.71084487358303 23.84680274811595 19 23.945289493674604 26.752301638041626 26.503286855237075 22.799122013046695 20 24.907913493943205 25.586688621003695 26.797767820295267 22.707630064757833 21 24.14366194424587 27.219833887554433 26.869534440283317 21.766969727916376 22 22.040746093055986 25.03004265427375 26.69718263555567 26.23202861711459 23 20.753843291359885 27.28824300485299 26.525110622718824 25.4328030810683 24 21.40785683608532 25.460782270147465 29.064921511379836 24.06643938238738 25 21.40058224692474 27.511237141813922 26.67563865996472 24.412541951296625 26 20.267564985164036 28.50827554464989 26.672700845111407 24.55145862507467 27 22.094046448251788 27.353294619462044 26.166417418723952 24.38624151356221 28 19.74631269261923 26.79189219058864 28.72357540461405 24.73821971217808 29 20.52245539767521 26.645840823595414 26.354017881499743 26.47768589722964 30 22.348657068872175 26.480483816137557 26.027500744945907 25.14335837004436 31 23.252804563965324 27.161077590488198 23.521544675070682 26.064573170475803 32 22.651951478490297 29.264133337623477 22.391045540327102 25.692869643559117 33 22.619215827267677 26.76783008798056 23.735305679635488 26.877648405116272 34 20.980614618846502 26.1882411862057 26.538400737531425 26.292743457416375 35 20.92115884205328 26.13661958235464 25.446093195880902 27.49612837971117 36 24.092320132285604 27.7960652866398 24.60657762756062 23.505036953513976 37 21.529286516688888 27.366584734274646 26.844912753893652 24.259215995142814 38 21.289364970335065 29.376749573667105 24.119879633528583 25.21400582246925 39 23.584357954553404 26.497691017421243 26.28994553850846 23.628005489516898 40 23.387384463436096 26.26742229129973 28.201203944506076 22.143989300758097 41 19.861866743516174 27.801940916346425 26.201111613182114 26.13508072695529 42 20.51112382609815 26.965922746661036 26.471390579686826 26.05156284755399 43 21.954150502855978 25.350824057066358 26.431660131194416 26.26336530888325 44 21.866295849147406 24.97968011393126 26.822809194521113 26.331214842400225 45 22.88753625053685 24.55649487910892 25.372927616438893 27.183041253915334 46 23.2368564261902 26.016868653095827 26.769648735270707 23.976626185443266 47 21.198432605827787 26.27050000209844 28.27772702663759 24.253340365436188 48 20.777066018295592 25.597180816908384 27.624832649475323 26.0009205153207 49 21.28628725953636 24.86762346166921 28.760507934198543 25.08558134459589 50 20.361155372633835 23.69501564736149 29.767758741048407 26.17607023895626 51 20.36269422803319 24.53970736566142 26.452644523003787 28.6449538833016 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1480.0 1 1628.5 2 1777.0 3 2263.0 4 2749.0 5 2005.5 6 1262.0 7 1259.5 8 1257.0 9 1300.0 10 1343.0 11 1461.5 12 1580.0 13 1545.5 14 1511.0 15 1499.5 16 1488.0 17 1536.5 18 1585.0 19 1748.0 20 1911.0 21 1968.0 22 2025.0 23 2298.0 24 2571.0 25 3269.0 26 4305.0 27 4643.0 28 5767.5 29 6892.0 30 8740.5 31 10589.0 32 12033.5 33 13478.0 34 14333.5 35 15189.0 36 16068.0 37 16947.0 38 18808.0 39 20669.0 40 23740.0 41 26811.0 42 31637.0 43 36463.0 44 42337.0 45 48211.0 46 53891.0 47 59571.0 48 66372.5 49 73174.0 50 72261.5 51 71349.0 52 63285.5 53 55222.0 54 49689.5 55 44157.0 56 40534.0 57 36911.0 58 33857.5 59 30804.0 60 29250.5 61 27697.0 62 26558.5 63 25420.0 64 21907.0 65 18394.0 66 16232.0 67 14070.0 68 12043.0 69 10016.0 70 8161.5 71 6307.0 72 6079.5 73 5852.0 74 5052.0 75 3202.5 76 2153.0 77 1837.0 78 1521.0 79 1206.0 80 891.0 81 697.0 82 503.0 83 288.5 84 74.0 85 72.5 86 71.0 87 38.5 88 6.0 89 4.5 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 714817.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.663163504921187 #Duplication Level Percentage of deduplicated Percentage of total 1 73.59285503489565 18.886254715544894 2 11.000268671049678 5.646033870064201 3 4.1242767703962135 3.1752596729467895 4 2.080378935896863 2.1355641913646064 5 1.2169143167940208 1.561493554168221 6 0.7672127777103436 1.1813464174467183 7 0.5252288729982802 0.9435324111682245 8 0.4110058822227665 0.843816892557379 9 0.34081154085584014 0.78716720676128 >10 4.034715320703132 26.948046353578786 >50 1.7604110367122288 30.59338287887656 >100 0.13821181426799087 5.195225401900343 >500 0.0038545127485097056 0.6637464289175798 >1k 0.0038545127485097056 1.4391300047044142 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC 2932 0.4101749119005284 No Hit CTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGCT 1419 0.1985123465166609 No Hit CCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC 1359 0.19011858979291202 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1190 0.16647617502101938 No Hit ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC 1146 0.16032075342360352 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1084 0.15164720480906302 No Hit TCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC 1054 0.14745032644718858 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCC 762 0.10660071039161072 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 730 0.10212404013894465 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2106832937660968 0.0 2 0.0 0.0 0.0 1.1156701645316214 0.0 3 0.0 0.0 0.0 1.491710465755571 0.0 4 0.0 0.0 0.0 1.961900738230904 0.0 5 0.0 0.0 0.0 3.2773423127877486 0.0 6 0.0 0.0 0.0 4.201075240236312 0.0 7 0.0 0.0 0.0 5.0121919316412455 0.0 8 0.0 0.0 0.0 6.4028975248210385 0.0 9 0.0 0.0 0.0 7.008367176494124 0.0 10 1.398959453958146E-4 0.0 0.0 8.276384025561788 0.0 11 1.398959453958146E-4 0.0 0.0 9.806425980355812 0.0 12 1.398959453958146E-4 0.0 0.0 10.946717831277097 0.0 13 1.398959453958146E-4 0.0 0.0 11.405996220011556 0.0 14 1.398959453958146E-4 0.0 0.0 11.582125215264886 0.0 15 1.398959453958146E-4 0.0 0.0 11.892414422152802 0.0 16 1.398959453958146E-4 0.0 0.0 12.604065096381312 0.0 17 1.398959453958146E-4 0.0 0.0 13.452254213316136 0.0 18 1.398959453958146E-4 0.0 0.0 14.510567040235474 0.0 19 1.398959453958146E-4 0.0 0.0 15.018109530131488 0.0 20 1.398959453958146E-4 0.0 0.0 15.513341176832672 0.0 21 1.398959453958146E-4 0.0 0.0 16.106499985310926 0.0 22 1.398959453958146E-4 0.0 0.0 16.685109615468015 0.0 23 1.398959453958146E-4 0.0 0.0 17.28624249283383 0.0 24 1.398959453958146E-4 0.0 0.0 17.791826439494304 0.0 25 1.398959453958146E-4 0.0 0.0 18.215291466207436 0.0 26 2.797918907916292E-4 0.0 0.0 18.594969062011675 0.0 27 2.797918907916292E-4 0.0 0.0 18.986118125338372 0.0 28 2.797918907916292E-4 0.0 0.0 19.39027751158688 0.0 29 4.196878361874438E-4 0.0 0.0 19.799053464033452 0.0 30 4.196878361874438E-4 0.0 0.0 20.25707278925935 0.0 31 4.196878361874438E-4 0.0 0.0 20.683195838935 0.0 32 4.196878361874438E-4 0.0 0.0 21.085816369784155 0.0 33 4.196878361874438E-4 0.0 0.0 21.50004826410116 0.0 34 4.196878361874438E-4 0.0 0.0 21.905326817912837 0.0 35 4.196878361874438E-4 0.0 0.0 22.368242501227588 0.0 36 4.196878361874438E-4 0.0 0.0 22.767085841551054 0.0 37 4.196878361874438E-4 0.0 0.0 23.157675321096168 0.0 38 5.595837815832584E-4 0.0 0.0 23.54392802633401 0.0 39 5.595837815832584E-4 0.0 0.0 23.919548639721775 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGGAT 25 3.8893195E-5 45.000004 18 CGTGATA 25 3.8893195E-5 45.000004 39 TCTAGTA 25 3.8893195E-5 45.000004 19 CGTTACT 25 3.8893195E-5 45.000004 19 TGCGAAC 30 2.1643446E-6 45.000004 33 CGGTATG 25 3.8893195E-5 45.000004 6 GTAAGCG 25 3.8893195E-5 45.000004 1 TATCGCG 60 0.0 45.000004 1 CAATACG 30 2.1643446E-6 45.000004 1 ACTATCG 20 7.0314953E-4 45.0 44 GATACGA 20 7.0314953E-4 45.0 11 CGAGTTA 20 7.0314953E-4 45.0 38 CGTTCTA 20 7.0314953E-4 45.0 27 TCGATAT 20 7.0314953E-4 45.0 16 CTACGAT 20 7.0314953E-4 45.0 35 GTCGTAC 20 7.0314953E-4 45.0 18 TATTACG 20 7.0314953E-4 45.0 1 CGAATCG 20 7.0314953E-4 45.0 43 TTTATCG 20 7.0314953E-4 45.0 1 CCGCGAA 20 7.0314953E-4 45.0 40 >>END_MODULE