SRR3552580_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552580_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	997990
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	3175	0.31813946031523366	RNA PCR Primer, Index 27 (95% over 23bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCG	1641	0.1644305053156845	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGC	1423	0.14258659906411889	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTC	1358	0.13607350775057866	No Hit
CTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGCT	1334	0.13366867403480995	RNA PCR Primer, Index 38 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1333	0.13356847262998628	No Hit
CCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	1206	0.12084289421737693	RNA PCR Primer, Index 38 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	1046	0.10481066944558563	RNA PCR Primer, Index 27 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATTA	20	7.032838E-4	45.000004	17
CGTATGG	140	0.0	45.000004	2
GTCGACA	20	7.032838E-4	45.000004	18
CACGGTA	20	7.032838E-4	45.000004	39
CTCCGAT	20	7.032838E-4	45.000004	23
TTTACGT	30	2.165214E-6	45.000004	17
ACGTTAG	35	1.2117198E-7	45.000004	1
ATAATCG	20	7.032838E-4	45.000004	40
GACGTAC	20	7.032838E-4	45.000004	27
ATTACCG	20	7.032838E-4	45.000004	20
CGCGATT	20	7.032838E-4	45.000004	13
CGTTACG	20	7.032838E-4	45.000004	45
ACGATTG	20	7.032838E-4	45.000004	34
CGTAGTA	20	7.032838E-4	45.000004	32
CGCTAAA	20	7.032838E-4	45.000004	26
TATTCGA	20	7.032838E-4	45.000004	14
TCCGTTA	30	2.165214E-6	45.000004	27
ACGTCGA	20	7.032838E-4	45.000004	21
CTCGATT	20	7.032838E-4	45.000004	14
CGGTACC	20	7.032838E-4	45.000004	23