SRR3552579_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552579_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	928768
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	4058	0.4369228914002205	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	2948	0.31740972987872107	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	2398	0.2581914966923925	No Hit
TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	1614	0.17377859702315324	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1406	0.15138333792723266	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1338	0.14406181091510475	No Hit
ACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	1092	0.11757511025358323	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	990	0.1065928197353914	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTA	20	7.0325873E-4	45.0	38
ACACGAA	25	3.8902257E-5	45.0	24
ACGCCAA	25	3.8902257E-5	45.0	44
CGTATAG	25	3.8902257E-5	45.0	2
CGAGTAT	20	7.0325873E-4	45.0	24
ACCGCGT	20	7.0325873E-4	45.0	23
CGCATCG	20	7.0325873E-4	45.0	21
GCGCATC	25	3.8902257E-5	45.0	9
TAGTTCG	20	7.0325873E-4	45.0	1
ATATCGT	20	7.0325873E-4	45.0	17
CACTCGA	20	7.0325873E-4	45.0	16
TCTACCG	25	3.8902257E-5	45.0	22
TCGCTAA	20	7.0325873E-4	45.0	21
ACTCGCA	20	7.0325873E-4	45.0	27
ACTCGAT	20	7.0325873E-4	45.0	17
CATCGTT	20	7.0325873E-4	45.0	36
TTACGAG	50	2.1827873E-11	45.0	1
ACGTATA	25	3.8902257E-5	45.0	20
CAACTCG	20	7.0325873E-4	45.0	36
ACTCACG	25	3.8902257E-5	45.0	13