##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552579_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 928768 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.660888402701215 31.0 31.0 34.0 30.0 34.0 2 31.805884785005514 33.0 31.0 34.0 30.0 34.0 3 31.861128936397463 33.0 31.0 34.0 30.0 34.0 4 35.493576436742 37.0 35.0 37.0 33.0 37.0 5 35.31556104430816 37.0 35.0 37.0 33.0 37.0 6 35.322810432745314 37.0 35.0 37.0 32.0 37.0 7 35.75185191565601 37.0 35.0 37.0 35.0 37.0 8 35.5864952280871 37.0 35.0 37.0 35.0 37.0 9 37.302692383889195 39.0 37.0 39.0 34.0 39.0 10 36.79186729086273 39.0 37.0 39.0 32.0 39.0 11 36.708757192323596 39.0 35.0 39.0 32.0 39.0 12 36.535394199627895 39.0 35.0 39.0 32.0 39.0 13 36.30885538692117 39.0 35.0 39.0 32.0 39.0 14 37.374725442737045 39.0 36.0 41.0 32.0 41.0 15 37.52827293791345 39.0 36.0 41.0 32.0 41.0 16 37.602752248139474 39.0 36.0 41.0 33.0 41.0 17 37.580231015711135 39.0 36.0 41.0 33.0 41.0 18 37.591283291414 39.0 36.0 41.0 33.0 41.0 19 37.55620564015987 39.0 36.0 41.0 33.0 41.0 20 37.47769733668688 39.0 35.0 41.0 32.0 41.0 21 37.36603435949559 39.0 35.0 41.0 32.0 41.0 22 37.39812095162624 39.0 35.0 41.0 32.0 41.0 23 37.32062689498346 39.0 35.0 41.0 32.0 41.0 24 37.29548929334344 39.0 35.0 41.0 32.0 41.0 25 37.14349654596196 39.0 35.0 41.0 32.0 41.0 26 37.148454727122385 39.0 35.0 41.0 32.0 41.0 27 36.94577870899945 39.0 35.0 41.0 31.0 41.0 28 36.990716734426684 39.0 35.0 41.0 31.0 41.0 29 37.00231920135061 39.0 35.0 41.0 31.0 41.0 30 36.85692013506064 39.0 35.0 40.0 31.0 41.0 31 36.86105679782249 39.0 35.0 40.0 31.0 41.0 32 36.758857970989524 39.0 35.0 40.0 31.0 41.0 33 36.66249698525358 39.0 35.0 40.0 31.0 41.0 34 36.601736924614116 39.0 35.0 40.0 31.0 41.0 35 36.49901267054851 39.0 35.0 40.0 30.0 41.0 36 36.4288961290656 38.0 35.0 40.0 30.0 41.0 37 36.42558313809261 38.0 35.0 40.0 30.0 41.0 38 36.30450553851985 38.0 35.0 40.0 30.0 41.0 39 36.30120869797409 38.0 35.0 40.0 30.0 41.0 40 36.18784454244763 38.0 35.0 40.0 30.0 41.0 41 36.10845873242833 38.0 35.0 40.0 30.0 41.0 42 36.094441238285555 38.0 35.0 40.0 30.0 41.0 43 36.04145168653528 38.0 35.0 40.0 30.0 41.0 44 35.94946208310364 38.0 35.0 40.0 30.0 41.0 45 35.89123763953969 38.0 35.0 40.0 30.0 41.0 46 35.77536801440188 38.0 35.0 40.0 30.0 41.0 47 35.72311276874311 37.0 35.0 40.0 30.0 41.0 48 35.69131042413175 37.0 35.0 40.0 30.0 41.0 49 35.63464611183848 37.0 34.0 40.0 29.0 41.0 50 35.56065562121003 37.0 34.0 40.0 29.0 41.0 51 34.875117359771224 36.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 7.0 9 25.0 10 46.0 11 41.0 12 41.0 13 35.0 14 37.0 15 60.0 16 106.0 17 191.0 18 348.0 19 529.0 20 914.0 21 1408.0 22 2184.0 23 3026.0 24 4193.0 25 5737.0 26 7675.0 27 9274.0 28 11755.0 29 14466.0 30 18328.0 31 23958.0 32 31248.0 33 42795.0 34 71369.0 35 91338.0 36 84584.0 37 117242.0 38 175353.0 39 210333.0 40 120.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.97822491730982 19.56484288864388 24.24114525909592 13.215786934950385 2 30.245120417585447 24.81545445148842 25.189498346196252 19.74992678472988 3 32.50036607635061 24.730718543274534 25.540285625689087 17.22862975468578 4 28.468250413450935 26.201268777563396 25.06837014195149 20.26211066703418 5 24.006533386163177 30.532275013781696 24.73760939222712 20.723582207828002 6 24.67171564911797 34.152339443219404 24.822345300441015 16.353599607221607 7 81.54921358186328 5.866911866041896 7.808731566979052 4.7751429851157665 8 81.75626205898567 4.79430815876516 7.443839581036384 6.005590201212789 9 76.16412279492833 6.9038769638919515 10.380525599503859 6.5514746416758545 10 41.09594645810364 24.869612217475193 17.536241558710035 16.498199765711135 11 31.696720817254686 25.39977690876516 22.55299493522602 20.350507338754134 12 28.13619762954796 21.881244831863285 28.917232290518193 21.06532524807056 13 23.2920384853914 26.396581277563396 29.986390573318634 20.32498966372657 14 19.97064929024256 28.81731498070562 28.817099641675853 22.394936087375964 15 19.076992316703418 25.111007269845647 34.634160522326354 21.177839891124588 16 20.756421409867695 24.676883785832416 31.998087789415656 22.568607014884236 17 20.09683796168688 24.908050234288865 28.209628238699008 26.785483565325247 18 22.837996141124588 24.275599503858874 28.922400427232635 23.964003927783903 19 23.245632924476293 26.46861218302095 26.164445803472987 24.12130908902977 20 25.937693805126795 25.395900806229328 26.10167447629548 22.564730912348402 21 23.81972677783903 27.291637954796034 26.361804024255786 22.526831243109154 22 22.603599607221607 25.572048132579933 24.773032662624036 27.05131959757442 23 21.356032938257993 28.086023635611905 25.054480774531424 25.503462651598678 24 22.124793274531424 25.915621554575523 27.727376481532524 24.23220868936053 25 21.55252980292172 26.66037158902977 27.014065945424477 24.773032662624036 26 20.0891934261301 26.443848194597575 27.712841097023155 25.754117282249172 27 21.556298235942666 26.056130271499452 27.64134853914002 24.746222953417863 28 19.828202522050717 26.040195183296582 30.280759027012127 23.850843267640574 29 20.75965149531422 25.346157490352812 27.53217165104741 26.362019363285555 30 22.04253376515987 25.980438602535834 26.91091855016538 25.066109082138922 31 22.465890297684673 26.130745245314223 25.687146843991183 25.716217613009924 32 22.847686397464166 25.788679196527013 26.273192013506062 25.090442392502755 33 21.279264574145536 25.79653907111356 27.009005478224918 25.915190876515986 34 19.65786934950386 25.20877118936053 28.391912727398015 26.741446733737597 35 19.626322181642777 24.146934433572216 28.660440497519296 27.56630288726571 36 22.222880202590957 25.870400358324147 28.06481274117971 23.841906697905184 37 20.23034816014333 25.600580554024255 30.29077229189636 23.878298993936053 38 20.25220507166483 27.579653907111357 28.303516055678056 23.864624965545755 39 22.230955416207276 25.112299304024255 28.51616334757442 24.140581932194046 40 23.093280560915105 23.679433399944873 27.75397085170893 25.47331518743109 41 19.30439033213892 23.634427542723262 27.25266159040794 29.808520534729876 42 20.84503342061742 23.389371726846747 28.44240972987872 27.32318512265711 43 21.15662899669239 22.989271809536934 30.022890538864388 25.831208654906284 44 21.117867971334068 24.81534678197354 28.484077832138922 25.582707414553475 45 21.95715183985667 23.91329158627343 27.017296030871 27.112260542998897 46 22.320644122105843 24.911387989250276 27.181922719129 25.586045169514883 47 20.005211204520396 24.091699972436604 29.94666052232635 25.95642830071665 48 21.26903597023153 23.258768605292172 28.56676801957001 26.905427404906284 49 21.312319115214994 22.5606394707828 31.028954485942666 25.098086928059537 50 20.91577229189636 22.85845334895259 29.99597316014333 26.229801199007717 51 20.60525341097023 23.052689153803748 26.865697353914005 29.47636008131202 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1754.0 1 1878.0 2 2002.0 3 2540.5 4 3079.0 5 2301.5 6 1524.0 7 1533.0 8 1542.0 9 1582.5 10 1623.0 11 1593.0 12 1563.0 13 1746.5 14 1930.0 15 1763.0 16 1596.0 17 1942.5 18 2289.0 19 2360.5 20 2432.0 21 2409.0 22 2386.0 23 2479.0 24 2572.0 25 3505.0 26 5290.0 27 6142.0 28 8085.0 29 10028.0 30 10919.5 31 11811.0 32 11954.5 33 12098.0 34 14653.0 35 17208.0 36 19312.0 37 21416.0 38 23834.5 39 26253.0 40 31947.5 41 37642.0 42 45707.0 43 53772.0 44 65496.0 45 77220.0 46 87059.5 47 96899.0 48 96853.0 49 96807.0 50 86123.5 51 75440.0 52 67986.5 53 60533.0 54 57305.5 55 54078.0 56 49721.0 57 45364.0 58 42459.5 59 39555.0 60 37443.0 61 35331.0 62 33325.0 63 31319.0 64 28393.0 65 25467.0 66 22124.0 67 18781.0 68 16495.5 69 14210.0 70 11859.5 71 9509.0 72 8721.0 73 7933.0 74 6712.0 75 4719.5 76 3948.0 77 3045.5 78 2143.0 79 1538.5 80 934.0 81 653.5 82 373.0 83 231.0 84 89.0 85 132.0 86 175.0 87 113.0 88 51.0 89 29.0 90 7.0 91 5.0 92 3.0 93 2.5 94 2.0 95 3.5 96 5.0 97 3.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 928768.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.297737997406436 #Duplication Level Percentage of deduplicated Percentage of total 1 72.81399241047303 17.692153101348143 2 11.256688241842841 5.470241232375661 3 4.617400929512725 3.3657719404284343 4 2.3650257503054433 2.2985910415216493 5 1.3330358638467152 1.6194878080446924 6 0.8894584306380581 1.2967096744336704 7 0.6419262077075755 1.091814836598316 8 0.4780076701843223 0.9291604104711464 9 0.3252603387700774 0.7112781443144698 >10 3.1134914056483862 17.470457893851936 >50 1.6013852898599104 28.594645478444892 >100 0.5562847895547085 17.055278113411898 >500 0.004914966012129955 0.7917715491235485 >1k 0.003127705644082699 1.6126387756315905 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 4058 0.4369228914002205 No Hit CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 2948 0.31740972987872107 No Hit CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT 2398 0.2581914966923925 No Hit TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 1614 0.17377859702315324 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1406 0.15138333792723266 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1338 0.14406181091510475 No Hit ACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 1092 0.11757511025358323 No Hit ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC 990 0.1065928197353914 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2721885336273429 0.0 2 1.0766951488423373E-4 0.0 0.0 1.3810768674200662 0.0 3 1.0766951488423373E-4 0.0 0.0 1.7870986080485116 0.0 4 1.0766951488423373E-4 0.0 0.0 2.2931453280044103 0.0 5 1.0766951488423373E-4 0.0 0.0 3.7691867075523704 0.0 6 1.0766951488423373E-4 0.0 0.0 4.828547064498347 0.0 7 2.1533902976846747E-4 0.0 0.0 5.827935501653804 0.0 8 2.1533902976846747E-4 0.0 0.0 7.460420686328556 0.0 9 2.1533902976846747E-4 0.0 0.0 8.12377256753032 0.0 10 2.1533902976846747E-4 0.0 0.0 9.476424683020948 0.0 11 2.1533902976846747E-4 0.0 0.0 11.034617902425579 0.0 12 2.1533902976846747E-4 0.0 0.0 12.29198249724366 0.0 13 2.1533902976846747E-4 0.0 0.0 12.75862217475193 0.0 14 2.1533902976846747E-4 0.0 0.0 12.922495176405732 0.0 15 2.1533902976846747E-4 0.0 0.0 13.239366558710033 0.0 16 2.1533902976846747E-4 0.0 0.0 13.942556160418963 0.0 17 2.1533902976846747E-4 0.0 0.0 14.840842923098126 1.0766951488423373E-4 18 2.1533902976846747E-4 0.0 0.0 15.916353707276736 1.0766951488423373E-4 19 3.230085446527012E-4 0.0 0.0 16.437366489801544 1.0766951488423373E-4 20 3.230085446527012E-4 0.0 0.0 16.922309984840133 1.0766951488423373E-4 21 3.230085446527012E-4 0.0 0.0 17.546254823594268 1.0766951488423373E-4 22 3.230085446527012E-4 0.0 0.0 18.124332449007717 1.0766951488423373E-4 23 3.230085446527012E-4 0.0 0.0 18.732557538588754 1.0766951488423373E-4 24 3.230085446527012E-4 0.0 0.0 19.235697181642777 1.0766951488423373E-4 25 3.230085446527012E-4 0.0 0.0 19.671866386438808 1.0766951488423373E-4 26 3.230085446527012E-4 0.0 0.0 20.069059226846747 1.0766951488423373E-4 27 4.3067805953693494E-4 0.0 0.0 20.49715321802646 1.0766951488423373E-4 28 4.3067805953693494E-4 0.0 0.0 20.904897670893053 1.0766951488423373E-4 29 4.3067805953693494E-4 0.0 0.0 21.318994625137815 1.0766951488423373E-4 30 4.3067805953693494E-4 0.0 0.0 21.79747794928335 1.0766951488423373E-4 31 4.3067805953693494E-4 0.0 0.0 22.24732118246968 1.0766951488423373E-4 32 5.383475744211687E-4 0.0 0.0 22.684136404355016 1.0766951488423373E-4 33 7.536866041896362E-4 0.0 0.0 23.123535694597575 1.0766951488423373E-4 34 7.536866041896362E-4 0.0 0.0 23.54861493936053 1.0766951488423373E-4 35 7.536866041896362E-4 0.0 0.0 23.99673546030871 1.0766951488423373E-4 36 7.536866041896362E-4 0.0 0.0 24.416538898842337 1.0766951488423373E-4 37 7.536866041896362E-4 0.0 0.0 24.831066531146636 1.0766951488423373E-4 38 7.536866041896362E-4 0.0 0.0 25.22965907524807 1.0766951488423373E-4 39 7.536866041896362E-4 0.0 0.0 25.61543894707828 1.0766951488423373E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTTA 20 7.0325873E-4 45.0 38 ACACGAA 25 3.8902257E-5 45.0 24 ACGCCAA 25 3.8902257E-5 45.0 44 CGTATAG 25 3.8902257E-5 45.0 2 CGAGTAT 20 7.0325873E-4 45.0 24 ACCGCGT 20 7.0325873E-4 45.0 23 CGCATCG 20 7.0325873E-4 45.0 21 GCGCATC 25 3.8902257E-5 45.0 9 TAGTTCG 20 7.0325873E-4 45.0 1 ATATCGT 20 7.0325873E-4 45.0 17 CACTCGA 20 7.0325873E-4 45.0 16 TCTACCG 25 3.8902257E-5 45.0 22 TCGCTAA 20 7.0325873E-4 45.0 21 ACTCGCA 20 7.0325873E-4 45.0 27 ACTCGAT 20 7.0325873E-4 45.0 17 CATCGTT 20 7.0325873E-4 45.0 36 TTACGAG 50 2.1827873E-11 45.0 1 ACGTATA 25 3.8902257E-5 45.0 20 CAACTCG 20 7.0325873E-4 45.0 36 ACTCACG 25 3.8902257E-5 45.0 13 >>END_MODULE