SRR3552574_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552574_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1379294
Sequences flagged as poor quality	0
Sequence length	51
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2472	0.17922212378216681	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTC	2462	0.17849711519081501	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGC	2268	0.16443194851858994	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCG	2267	0.16435944765945476	No Hit
GCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	2107	0.15275931019782585	TruSeq Adapter, Index 20 (95% over 21bp)
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	2099	0.15217930332474439	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1592	0.11542136774320776	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	1471	0.10664876378785088	TruSeq Adapter, Index 20 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAATA	20	7.0337777E-4	45.0	15
CGGTCTA	40	6.8175723E-9	45.0	31
CGTTACA	25	3.891214E-5	44.999996	39
GGACGTA	55	6.184564E-11	40.909092	8
ATAACGG	55	6.184564E-11	40.909092	2
TAGGACG	50	1.0822987E-9	40.499996	1
TAAGACG	50	1.0822987E-9	40.499996	1
ACGTAAC	35	6.249198E-6	38.57143	16
CGTAAGG	220	0.0	37.840908	2
TACGGGA	340	0.0	37.72059	4
ACGCATT	85	0.0	37.058823	17
TATGCGG	170	0.0	37.058823	2
GCGTAAG	170	0.0	37.058823	1
CGAGGGA	755	0.0	36.953644	4
CGTTGAT	270	0.0	36.666664	25
AAGGGTA	400	0.0	36.562496	5
ATTCGGT	25	0.002107255	35.999996	13
CGTACTC	25	0.002107255	35.999996	45
GTATACG	25	0.002107255	35.999996	1
GACGATA	25	0.002107255	35.999996	37