SRR3552573_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552573_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	619539
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	1354	0.2185495989760128	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	1254	0.20240856507822755	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	947	0.1528555910120267	No Hit
CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGCT	935	0.15091866694429246	TruSeq Adapter, Index 15 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	905	0.14607635677495687	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGTT	20	7.030765E-4	45.000004	45
ACCGGTT	20	7.030765E-4	45.000004	38
GTCGATC	20	7.030765E-4	45.000004	35
CGTATGA	20	7.030765E-4	45.000004	30
GTCGAAA	20	7.030765E-4	45.000004	9
GCGAACC	20	7.030765E-4	45.000004	23
TAGGTCG	20	7.030765E-4	45.000004	1
TGGCGAA	20	7.030765E-4	45.000004	23
GGCCGAT	80	0.0	45.000004	8
CGCGAAT	20	7.030765E-4	45.000004	35
AATATCG	20	7.030765E-4	45.000004	1
ATCCGTG	20	7.030765E-4	45.000004	1
CCCAATC	20	7.030765E-4	45.000004	17
GTTCGAC	20	7.030765E-4	45.000004	33
AAATTCG	20	7.030765E-4	45.000004	30
CTCGCAC	20	7.030765E-4	45.000004	39
TATAGCG	20	7.030765E-4	45.000004	1
TTACGGT	20	7.030765E-4	45.000004	33
TGTAGCG	40	6.8066583E-9	45.000004	1
CGGTCGA	20	7.030765E-4	45.000004	33