SRR3552572_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552572_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1057945
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGC	3901	0.3687337243429479	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTC	3859	0.36476376371172414	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCG	3387	0.3201489680465431	No Hit
GCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	2498	0.23611813468564055	TruSeq Adapter, Index 21 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	2016	0.19055811029873954	TruSeq Adapter, Index 21 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1533	0.14490356303966653	No Hit
CTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGCT	1421	0.1343170013564032	TruSeq Adapter, Index 15 (95% over 24bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCC	1134	0.107188937043041	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGCG	40	6.8139343E-9	45.0	1
CGTATCA	20	7.0330314E-4	45.0	34
CCGATCG	25	3.8905957E-5	45.0	40
TTAGCGA	20	7.0330314E-4	45.0	14
CGTTGCG	25	3.8905957E-5	45.0	17
TTCGTAG	25	3.8905957E-5	45.0	1
TAAGTCG	20	7.0330314E-4	45.0	1
TCTAGCG	25	3.8905957E-5	45.0	1
ACGATCG	25	3.8905957E-5	45.0	40
CGCTCGT	25	3.8905957E-5	45.0	13
TACGCAA	20	7.0330314E-4	45.0	36
ACTACGC	25	3.8905957E-5	45.0	13
TTACGTC	20	7.0330314E-4	45.0	24
CGTAACG	20	7.0330314E-4	45.0	10
CCGAAAC	20	7.0330314E-4	45.0	22
TACGTCG	20	7.0330314E-4	45.0	1
CTTACCG	25	3.8905957E-5	45.0	1
TAGCACG	30	2.1653377E-6	44.999996	1
CTACGCA	70	0.0	41.785713	15
TGTAGCG	70	0.0	41.785713	1