SRR3552571_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552571_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	738170
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1746	0.23653088042049933	No Hit
GCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC	1732	0.23463429833236246	TruSeq Adapter, Index 22 (95% over 24bp)
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1728	0.23409241773575193	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1413	0.19141932075267215	No Hit
CTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGCT	1231	0.16676375360689272	Illumina Single End Adapter 2 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC	989	0.13397997751195523	TruSeq Adapter, Index 22 (95% over 24bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCC	773	0.10471842529498625	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAATT	20	7.0316443E-4	45.0	15
CGACCGT	20	7.0316443E-4	45.0	24
TCGATTG	20	7.0316443E-4	45.0	1
ATCCGTA	20	7.0316443E-4	45.0	34
ACGATTG	20	7.0316443E-4	45.0	11
CCACTAG	25	3.8894446E-5	45.0	18
ATTTTCG	25	3.8894446E-5	45.0	27
CTACGTT	20	7.0316443E-4	45.0	42
GTATGAT	25	3.8894446E-5	45.0	35
CGTAGAA	25	3.8894446E-5	45.0	42
ACTACGT	20	7.0316443E-4	45.0	41
AGCGATC	25	3.8894446E-5	45.0	45
TACCTAC	45	3.8380676E-10	45.0	24
GAACGGT	20	7.0316443E-4	45.0	21
CATACCG	20	7.0316443E-4	45.0	1
TCCGTAT	25	3.8894446E-5	45.0	15
TTACGCC	20	7.0316443E-4	45.0	13
TTACGAC	20	7.0316443E-4	45.0	13
ATAACGC	20	7.0316443E-4	45.0	11
CGACTCA	25	3.8894446E-5	45.0	25