SRR3552566_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552566_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	921020
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC	2434	0.26427221993007755	Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC	2275	0.2470087511671842	Illumina Single End Adapter 1 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGCT	1707	0.1853379948318169	Illumina Single End Adapter 1 (95% over 23bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1430	0.1552626435908015	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1346	0.1461423204707824	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1106	0.12008425441358493	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCC	953	0.10347223730212156	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGGATT	20	7.0325553E-4	45.000004	18
CATAGGT	20	7.0325553E-4	45.000004	13
TTACGAA	20	7.0325553E-4	45.000004	21
AGTCGAC	20	7.0325553E-4	45.000004	16
TCACGTA	20	7.0325553E-4	45.000004	14
ACGAACA	20	7.0325553E-4	45.000004	26
TAGGTCG	25	3.8902006E-5	45.0	1
ACGGCAC	25	3.8902006E-5	45.0	18
CTCGACG	55	1.8189894E-12	45.0	1
TTAACGG	110	0.0	42.954544	2
TACGAAT	250	0.0	42.3	12
ATAGCGG	115	0.0	41.086956	2
GTTAACG	50	1.0804797E-9	40.5	1
CGTTTAT	50	1.0804797E-9	40.5	39
GCGTAAG	95	0.0	40.26316	1
GCTACGA	270	0.0	40.0	10
CGAATAT	265	0.0	39.905663	14
ACGCATT	85	0.0	39.705883	17
CGTAAGG	125	0.0	39.6	2
CCCTCGT	120	0.0	39.375004	14