SRR3552565_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552565_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	675183
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGC	1666	0.24674791871240834	TruSeq Adapter, Index 14 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1259	0.1864679649813458	No Hit
GCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGC	1247	0.18469066904824322	TruSeq Adapter, Index 14 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1192	0.17654472935485638	No Hit
CTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGCT	830	0.12292963537292852	Illumina PCR Primer Index 8 (95% over 21bp)
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	776	0.11493180367396691	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCC	692	0.10249073214224885	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTTC	30	2.1641645E-6	45.000004	42
TATTACG	30	2.1641645E-6	45.000004	1
GTTGGTA	30	2.1641645E-6	45.000004	43
AATTTCG	20	7.031217E-4	45.0	32
GAATGCG	20	7.031217E-4	45.0	1
GCGAATG	20	7.031217E-4	45.0	1
CGACGAA	20	7.031217E-4	45.0	37
ATAGCGC	20	7.031217E-4	45.0	12
TAACGAG	20	7.031217E-4	45.0	1
ATCACGT	25	3.8890903E-5	45.0	16
TCGGCTA	25	3.8890903E-5	45.0	43
TAGCACG	45	3.8380676E-10	45.0	1
AATGACG	20	7.031217E-4	45.0	1
CTACGAT	25	3.8890903E-5	45.0	31
GAACGCT	25	3.8890903E-5	45.0	21
ACTAACG	20	7.031217E-4	45.0	1
ACGTCGT	20	7.031217E-4	45.0	1
AATTACG	20	7.031217E-4	45.0	23
CGTAACA	25	3.8890903E-5	45.0	18
TTCGGAT	20	7.031217E-4	45.0	31