SRR3552562_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552562_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	722317
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCG	3247	0.44952562379121636	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGC	3112	0.4308357687829582	No Hit
GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	3078	0.42612869418828575	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC	2722	0.37684285431465686	No Hit
CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	2366	0.32755701444102797	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1935	0.26788792178503346	No Hit
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT	1907	0.26401150741295026	Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1336	0.18496034289653987	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCC	1109	0.1535336978085799	No Hit
TCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	1035	0.1432888883966458	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCT	812	0.11241601679041195	No Hit
ACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	784	0.1085396024183288	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	725	0.10037144356286783	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATCGA	70	0.0	45.000004	41
CAGGTCG	20	7.031545E-4	45.0	34
ACGCAGT	25	3.889361E-5	45.0	11
CGCATCG	20	7.031545E-4	45.0	21
GTCTCGA	20	7.031545E-4	45.0	27
GAATACG	45	3.8380676E-10	45.0	1
ATCGTAG	20	7.031545E-4	45.0	2
ACGATAT	20	7.031545E-4	45.0	29
TCGTGCG	25	3.889361E-5	45.0	1
CGCTATC	20	7.031545E-4	45.0	26
TACGAGC	20	7.031545E-4	45.0	40
CTACGAT	20	7.031545E-4	45.0	27
CGCTAGG	25	3.889361E-5	45.0	2
CCGAGAC	20	7.031545E-4	45.0	21
TTGCGGT	25	3.889361E-5	45.0	12
GTCCGAC	20	7.031545E-4	45.0	41
TCGTAGC	20	7.031545E-4	45.0	26
TCCCGCT	25	3.889361E-5	45.0	41
CGGCTAG	20	7.031545E-4	45.0	14
GCGTGAT	20	7.031545E-4	45.0	33