SRR3552559_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552559_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	723724
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	1969	0.27206504136936177	No Hit
CCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	1718	0.23738331187027095	No Hit
CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT	1376	0.19012772824999585	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1233	0.17036881463099193	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1098	0.15171529478088333	No Hit
TCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	809	0.11178294487953971	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCC	772	0.10667049869839884	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	748	0.10335431739171286	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTAACGT	30	2.1643827E-6	45.000004	28
ACTATCC	20	7.0315535E-4	45.0	34
TCCGATT	20	7.0315535E-4	45.0	15
TAGCGAA	20	7.0315535E-4	45.0	1
TCGATAG	25	3.8893682E-5	45.0	1
GGTATGC	105	0.0	45.0	8
GTCGTAA	20	7.0315535E-4	45.0	31
TCGTAAG	25	3.8893682E-5	45.0	1
CGGTCTA	25	3.8893682E-5	45.0	31
ATAACCG	20	7.0315535E-4	45.0	15
ACGTAGA	20	7.0315535E-4	45.0	44
ATACGCG	20	7.0315535E-4	45.0	1
TGCGTAT	20	7.0315535E-4	45.0	10
ACGGTCT	20	7.0315535E-4	45.0	30
TACGAAT	145	0.0	41.896553	12
TTGCGAG	70	0.0	41.785713	1
GCTACGA	150	0.0	40.5	10
CAACGTC	45	1.9266736E-8	40.0	20
GTATGCG	45	1.9266736E-8	40.0	1
AGTTACG	45	1.9266736E-8	40.0	1