SRR3552557_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552557_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	940728
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	3087	0.3281501135290966	No Hit
CCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	1791	0.19038446819909688	No Hit
CTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGCT	1476	0.15689976273694414	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1136	0.12075754096827138	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGC	947	0.10066671769097975	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATT	150	0.0	45.000004	17
TTATCGA	20	7.032632E-4	45.000004	12
TAGCCGT	30	2.1650794E-6	45.000004	44
TATTGCG	60	0.0	45.000004	1
AATCTAC	20	7.032632E-4	45.000004	28
TTAACGG	65	0.0	45.000004	2
ACGTAAT	20	7.032632E-4	45.000004	11
ACGTAAG	40	6.8121153E-9	45.000004	1
TATCGCG	20	7.032632E-4	45.000004	19
CGCGTAC	25	3.890263E-5	45.0	43
TCCGGTA	25	3.890263E-5	45.0	18
TGCGTAT	155	0.0	42.096775	11
GATGCGT	150	0.0	42.000004	9
TACGAAG	60	3.6379788E-12	41.250004	1
CGTAAGG	180	0.0	41.25	2
TCGCAAT	55	6.002665E-11	40.909092	22
TGTTGCG	50	1.0804797E-9	40.5	1
GCGATAT	95	0.0	40.263157	9
TCAAGCG	560	0.0	40.178574	17
CGCAAGG	265	0.0	39.905663	2