SRR3552556_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552556_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	891546
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC	4022	0.45112647019895774	No Hit
CCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC	2297	0.25764234262730135	No Hit
CTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGCT	2285	0.2562963660876724	No Hit
TCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC	1430	0.1603955376391123	No Hit
ACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC	906	0.10162122874198302	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCC	905	0.10150906403034728	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTACG	30	2.164952E-6	45.000004	1
ACGCTAG	30	2.164952E-6	45.000004	1
TCGACGT	60	0.0	45.000004	26
TATCGCG	30	2.164952E-6	45.000004	1
AACCGTA	25	3.8900995E-5	45.0	35
CGAACGT	20	7.032435E-4	45.0	39
TAACGCG	20	7.032435E-4	45.0	1
TATCTCG	20	7.032435E-4	45.0	25
CGCTAGA	20	7.032435E-4	45.0	28
ATGCGAT	20	7.032435E-4	45.0	23
TTACGGC	20	7.032435E-4	45.0	1
ACGAGAT	25	3.8900995E-5	45.0	33
ACGACCG	20	7.032435E-4	45.0	1
GCGTAAG	105	0.0	42.857143	1
CGTTAGG	115	0.0	41.08696	2
GCGAGAC	690	0.0	40.434784	21
GACACGA	675	0.0	40.0	25
CCCGAAC	45	1.9274012E-8	40.0	11
CGACTGG	125	0.0	39.6	2
CGAGACA	700	0.0	39.535713	22