SRR3552546_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552546_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	795766
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGC	3087	0.38792810951963264	TruSeq Adapter, Index 21 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGC	2467	0.31001575840133905	TruSeq Adapter, Index 21 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGCT	1454	0.1827170298806433	Illumina Paired End PCR Primer 2 (95% over 21bp)
TGAATGATACCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCC	1449	0.182088704468399	No Hit
TCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGC	1044	0.13119434607661046	TruSeq Adapter, Index 21 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	20	7.031976E-4	45.000004	1
CGAACGC	20	7.031976E-4	45.000004	16
ACCGAAC	40	6.8102963E-9	45.000004	10
GCACGAT	20	7.031976E-4	45.000004	41
TGCGACA	20	7.031976E-4	45.000004	30
AGTTCGC	20	7.031976E-4	45.000004	1
CGTACGC	20	7.031976E-4	45.000004	13
GACGATT	20	7.031976E-4	45.000004	10
CCCGAAT	20	7.031976E-4	45.000004	22
CGTGATA	25	3.8897197E-5	45.0	6
CCGTAGT	45	3.8380676E-10	45.0	27
ACCGTAG	45	3.8380676E-10	45.0	26
CGCGTAC	25	3.8897197E-5	45.0	43
TATGCAG	95	0.0	42.63158	1
ATCACGC	60	3.6379788E-12	41.250004	42
GATCCTC	55	6.002665E-11	40.909092	9
CACCGTA	55	6.002665E-11	40.909092	25
GCTACGA	105	0.0	40.714287	10
CGTTAGG	50	1.0804797E-9	40.5	2
CTACGCG	50	1.0804797E-9	40.5	1