SRR3552543_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552543_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	503636
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	2998	0.5952711879214354	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGC	2014	0.399891985481578	No Hit
CCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	1661	0.3298016821672795	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTC	1555	0.308754735562986	No Hit
CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCT	1454	0.2887005694588949	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCG	1365	0.27102907655528996	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	912	0.18108316323694096	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	763	0.15149830433090566	No Hit
TCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	729	0.14474739692952848	No Hit
ACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	582	0.11555965022357417	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGCTA	90	0.0	45.000004	26
TAATGCG	45	3.8380676E-10	45.000004	1
GCGTAAG	30	2.1630622E-6	45.000004	1
CGAACTC	25	3.8876737E-5	45.0	13
GCGAAGT	20	7.0295075E-4	45.0	28
CGGTTAC	20	7.0295075E-4	45.0	45
CGGCAAT	20	7.0295075E-4	45.0	23
TTGTCGA	20	7.0295075E-4	45.0	32
TAACGCA	95	0.0	45.0	26
TATTGCG	20	7.0295075E-4	45.0	1
AAACGCT	20	7.0295075E-4	45.0	14
AACGGAC	25	3.8876737E-5	45.0	16
CCGTACT	20	7.0295075E-4	45.0	44
CGCTATC	20	7.0295075E-4	45.0	22
TACGAAT	35	1.2101191E-7	45.0	12
CGAATAT	35	1.2101191E-7	45.0	14
CGTACAT	20	7.0295075E-4	45.0	23
GAACCTA	20	7.0295075E-4	45.0	26
GCTACGA	35	1.2101191E-7	45.0	10
ATAGTAC	20	7.0295075E-4	45.0	23