SRR3552533_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552533_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	488726
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	2604	0.5328138875361654	No Hit
CTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT	2042	0.41782102855178566	No Hit
CCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	1806	0.3695322123234696	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1455	0.29771282886525374	No Hit
TCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	1084	0.22180117284531617	No Hit
TGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCTT	952	0.19479217393795295	Illumina Single End Adapter 2 (95% over 21bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	916	0.1874260833268539	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	821	0.1679877886586758	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCC	807	0.16512319786547064	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGC	700	0.14322953966025953	No Hit
ACTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	664	0.13586344904916045	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCG	626	0.12808813118188922	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTC	622	0.1272696766695449	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	566	0.11581131349672413	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTACGG	30	2.1629312E-6	45.000004	2
AGCGTAA	20	7.029303E-4	45.0	20
CAACGCT	20	7.029303E-4	45.0	42
TTATGCG	40	6.8012014E-9	45.0	1
ATAGCGG	85	0.0	45.0	2
CGCTACA	20	7.029303E-4	45.0	28
CGTAAGC	20	7.029303E-4	45.0	22
ATGCGAG	25	3.887504E-5	45.0	1
TATAACG	20	7.029303E-4	45.0	1
AACGGGC	70	0.0	41.785713	4
TCGGCGT	185	0.0	41.351353	4
CGTTCAG	135	0.0	40.0	38
CATAGCG	45	1.9244908E-8	40.0	1
TAATAGG	40	3.4527875E-7	39.375	2
GGTCGGC	200	0.0	39.375	2
CGTTAGG	70	0.0	38.571426	2
TAGGACG	35	6.2409217E-6	38.571426	1
GTCTCGC	65	9.094947E-12	38.076927	1
GTGGCGT	160	0.0	37.96875	34
ACACGCG	125	0.0	37.800003	36