SRR3552529_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552529_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	642838
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	2941	0.4575025122970328	No Hit
CTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGCT	1988	0.3092536533310103	No Hit
CCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	1646	0.2560520691060578	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1208	0.1879167068530485	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1175	0.18278322065590397	No Hit
TCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	1074	0.16707164168888586	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCC	984	0.15307122478758256	No Hit
TGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGCTT	802	0.12475927060939147	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	681	0.10593648788652817	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGCAT	30	2.1640026E-6	45.000004	16
TTCGTAA	25	3.8888804E-5	45.0	42
TGCGACA	20	7.0309633E-4	45.0	27
ACATGCG	20	7.0309633E-4	45.0	1
GTAAGCG	20	7.0309633E-4	45.0	1
TATCGCG	20	7.0309633E-4	45.0	1
TAAGACG	25	3.8888804E-5	45.0	1
GGCACGA	55	6.002665E-11	40.909092	8
CACGAGG	50	1.0804797E-9	40.5	2
TCGGCGT	190	0.0	40.263157	4
ATTAGTC	40	3.455043E-7	39.375	31
CGCAATC	40	3.455043E-7	39.375	20
TAGGACG	40	3.455043E-7	39.375	1
CGCGAGG	75	0.0	39.0	2
ACGTTAG	35	6.243994E-6	38.571426	1
GCAACGA	35	6.243994E-6	38.571426	11
TTATGCG	35	6.243994E-6	38.571426	1
CGTTGAT	35	6.243994E-6	38.571426	25
TAAACGG	35	6.243994E-6	38.571426	2
CGCTACA	35	6.243994E-6	38.571426	28