SRR3552523_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552523_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	716652
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	4248	0.5927563168734616	No Hit
CCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	4070	0.5679185992643571	No Hit
CTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCT	3528	0.49228914452202743	Illumina Single End Adapter 1 (95% over 21bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	2154	0.3005642906180406	No Hit
TCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	2055	0.28675005441971835	No Hit
TGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCTT	1638	0.22856281709951273	Illumina Single End Adapter 1 (95% over 22bp)
ACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	1409	0.19660867478218158	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1174	0.1638173060285885	No Hit
GCCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTG	879	0.12265367291237589	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCC	874	0.12195598421549092	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATA	20	7.0315076E-4	45.0	9
TATGCGG	100	0.0	45.0	2
GCGTTAG	35	1.211065E-7	45.0	1
CGTTCAT	35	1.211065E-7	45.0	17
GTATGCG	25	3.88933E-5	45.0	1
GTATACG	35	1.211065E-7	45.0	1
AATAGCG	25	3.88933E-5	45.0	1
GCGTATT	25	3.88933E-5	45.0	17
ACGTACG	30	2.1643536E-6	44.999996	1
TATTAGG	95	0.0	42.63158	2
CGAAAGG	85	0.0	42.35294	2
CTTGCGG	65	0.0	41.538464	2
TATACGG	55	6.002665E-11	40.90909	2
CGAATAT	150	0.0	40.500004	14
GCTACGA	150	0.0	40.500004	10
TCTACGG	50	1.0804797E-9	40.5	2
TCGGCGT	215	0.0	39.76744	4
TTTACGT	40	3.4557888E-7	39.375	13
TAGCGCG	40	3.4557888E-7	39.375	1
AATTGCG	40	3.4557888E-7	39.375	1