SRR3552518_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552518_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	432271
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC	2850	0.6593086281522471	No Hit
CTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGCT	2630	0.6084146287861086	No Hit
CCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC	1663	0.38471236793585506	No Hit
TCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC	1334	0.3086027052474027	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1063	0.2459105514827504	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	951	0.22000087907817087	No Hit
ACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC	793	0.18344973407885332	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCC	698	0.16147277980711175	No Hit
TGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGCTT	643	0.14874927996557716	Illumina Single End Adapter 1 (95% over 21bp)
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	487	0.11266080768776994	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	470	0.10872808955493198	No Hit
GCCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTG	457	0.1057207168651147	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCACCG	35	1.2095734E-7	45.000004	23
CGAATAT	60	0.0	45.000004	14
CCTTGAA	30	2.1623473E-6	45.000004	14
CAACGTG	20	7.0283987E-4	45.0	20
ATTCGTA	20	7.0283987E-4	45.0	32
TTCGTAC	20	7.0283987E-4	45.0	33
CGACAGG	25	3.8867533E-5	45.0	2
TCGGCGT	110	0.0	45.0	4
GTTAACG	25	3.8867533E-5	45.0	1
AAATTCG	20	7.0283987E-4	45.0	30
AATTCGT	20	7.0283987E-4	45.0	31
CGTAAGC	20	7.0283987E-4	45.0	25
AATAGCG	20	7.0283987E-4	45.0	1
TACCGTT	20	7.0283987E-4	45.0	13
GCTACGA	65	0.0	44.999996	10
GTAGGGT	155	0.0	43.548386	4
CTACGAA	70	0.0	41.785717	11
TACGAAT	70	0.0	41.785717	12
AGGGTAC	95	0.0	40.26316	6
TACGGGT	45	1.9235813E-8	40.0	4