SRR3552512_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552512_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	628700
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	3547	0.5641800540798473	No Hit
CTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGCT	2384	0.3791951646254175	No Hit
CCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	1791	0.2848735485923334	No Hit
TCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	1696	0.2697630030221091	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1500	0.2385875616351201	No Hit
TGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGCTT	1191	0.18943852393828536	Illumina Single End Adapter 1 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	1055	0.16780658501670112	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCC	837	0.133131859392397	No Hit
GCCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG	696	0.11070462859869572	No Hit
GGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG	687	0.109273103228885	No Hit
AGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTG	650	0.10338794337521871	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATT	25	3.8887814E-5	45.000004	17
TACGCAT	25	3.8887814E-5	45.000004	16
CTACGCA	25	3.8887814E-5	45.000004	15
GTCGACA	20	7.030847E-4	45.0	35
ACGTCGA	20	7.030847E-4	45.0	33
CGTCGAC	20	7.030847E-4	45.0	34
ATAACGG	20	7.030847E-4	45.0	2
GTAGTGC	20	7.030847E-4	45.0	33
CCCTCGT	55	6.002665E-11	40.909092	14
GCGTAAG	55	6.002665E-11	40.909092	1
TGCGTAG	50	1.0804797E-9	40.500004	1
CGTAAGG	95	0.0	40.263153	2
CGATTGT	45	1.925946E-8	40.0	10
ACGATGG	90	0.0	40.0	2
AAGGGTC	135	0.0	40.0	5
AACGAAG	40	3.4548975E-7	39.375	1
TATAGCG	40	3.4548975E-7	39.375	1
CCACCCG	155	0.0	39.193546	45
CGCATGG	115	0.0	39.130436	2
TCGATAG	35	6.2437757E-6	38.571426	1