SRR3552511_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552511_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	527153
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	3868	0.733752819390196	No Hit
CTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGCT	2891	0.548417632072662	No Hit
CCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	1712	0.32476339886143113	No Hit
TCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	1646	0.31224331455953014	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1274	0.24167556667608836	No Hit
TGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGCTT	1102	0.20904746819234646	Illumina Single End Adapter 2 (95% over 21bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1101	0.20885776994534794	No Hit
ACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	983	0.186473376799525	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCG	935	0.17736786094359702	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	879	0.16674475911168105	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGC	865	0.16408898365370206	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCC	724	0.13734153082691364	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTC	700	0.13278877289894964	No Hit
GCCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTG	588	0.1115425692351177	No Hit
ACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTG	539	0.10224735513219123	No Hit
AGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTG	533	0.10110916565020023	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATAACG	25	3.887923E-5	45.0	1
ATTCGGT	20	7.0298085E-4	45.0	13
TCGATCA	50	2.1827873E-11	45.0	17
TGTTGCG	25	3.887923E-5	45.0	1
TACGCGG	40	6.8030204E-9	45.0	2
CTACGCG	25	3.887923E-5	45.0	1
TGTTACG	20	7.0298085E-4	45.0	1
ACAGACG	25	3.887923E-5	45.0	1
CTCGATC	55	1.8189894E-12	45.0	16
TAGGCAT	25	3.887923E-5	45.0	40
TATCGCG	20	7.0298085E-4	45.0	1
ATACCCG	20	7.0298085E-4	45.0	24
TGGTCGA	20	7.0298085E-4	45.0	45
TGCGTTT	25	3.887923E-5	45.0	43
ACGAACG	25	3.887923E-5	45.0	1
ATAACGG	30	2.1632568E-6	44.999996	2
TACGAAA	80	0.0	42.1875	20
CATACGA	80	0.0	42.1875	18
CCTCGAT	60	3.6379788E-12	41.249996	15
ACTATGC	55	6.002665E-11	40.909092	8