SRR3552507_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552507_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	910987
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTGC	4371	0.4798092618226166	Illumina PCR Primer Index 2 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTGCT	2544	0.2792575525227034	Illumina PCR Primer Index 2 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTGC	1877	0.2060402618259097	Illumina PCR Primer Index 2 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTGC	1716	0.18836712269220088	Illumina PCR Primer Index 2 (95% over 23bp)
TGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTGCTT	1462	0.16048527586013853	Illumina PCR Primer Index 2 (96% over 25bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	1175	0.12898098436091843	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCC	1041	0.11427166359124774	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGA	20	7.032516E-4	45.0	45
TATTGCG	40	6.8121153E-9	45.0	1
AATCTCG	20	7.032516E-4	45.0	1
TTACGAG	25	3.8901664E-5	45.0	1
CGTTTCA	20	7.032516E-4	45.0	38
GTACGAG	35	1.2115561E-7	45.0	1
CGAATAT	65	0.0	41.538464	14
TCGATTG	60	3.6379788E-12	41.249996	1
ACGTTAG	55	6.002665E-11	40.909092	1
CGACCAA	320	0.0	40.078125	29
ACGACCA	320	0.0	40.078125	28
GTCGATG	45	1.927583E-8	40.0	1
CGACAGG	135	0.0	40.0	2
GATTGCG	45	1.927583E-8	40.0	1
GCGAGAC	340	0.0	39.705883	21
GACACGA	340	0.0	39.705883	25
CACGACC	335	0.0	39.626865	27
TACGCAT	40	3.4571713E-7	39.375	16
ATTAGCG	35	6.2468625E-6	38.571426	1
ACGATAG	35	6.2468625E-6	38.571426	1