SRR3552506_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552506_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1065906
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC	3608	0.33849138667011913	No Hit
CTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGCT	3052	0.28632918850255085	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	2106	0.1975783980951416	No Hit
TCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC	1676	0.15723712972813736	No Hit
CCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC	1650	0.15479789024548132	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1538	0.1442903970894244	No Hit
TGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGCTT	1367	0.1282477066458018	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCC	1333	0.12505793193771308	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1160	0.10882760768773231	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTG	20	7.033055E-4	45.000004	12
GAACCGT	20	7.033055E-4	45.000004	11
TAAACGG	70	0.0	45.0	2
CCGGTAC	25	3.8906146E-5	45.0	11
GCGTAAT	25	3.8906146E-5	45.0	9
TATAGCG	60	0.0	44.999996	1
CGAATAT	140	0.0	43.392857	14
TTAATCG	75	0.0	42.0	20
TACGAAT	150	0.0	42.0	12
ACGTAGG	130	0.0	41.538464	2
AACGGGC	150	0.0	40.5	4
TCGTAAG	45	1.9281288E-8	40.0	1
GTATACG	45	1.9281288E-8	40.0	1
CGTTAAC	40	3.4578989E-7	39.375004	11
GCTACGA	160	0.0	39.375004	10
CGTTGAT	70	0.0	38.571426	25
GTTCGTA	35	6.247863E-6	38.571426	30
AGTTCGT	35	6.247863E-6	38.571426	29
GGCGATA	325	0.0	38.076923	8
TGCGCTA	30	1.13986636E-4	37.499996	30