SRR3552501_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552501_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	680129
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCTGC	3525	0.5182840314116881	No Hit
CTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCTGCT	2453	0.3606668734901761	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCTGC	2142	0.31494025398123004	No Hit
TCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCTGC	1787	0.2627442735128189	No Hit
ACTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCTGC	1139	0.16746823029160646	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCC	1117	0.1642335498118739	No Hit
TGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCTGCTT	1088	0.15996965281586287	Illumina Single End Adapter 2 (95% over 21bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	991	0.1457076525188604	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	891	0.1310045594291671	No Hit
GCCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCTG	785	0.11541928075409225	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	721	0.10600930117668854	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	683	0.10042212580260508	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCGAT	25	3.8891194E-5	45.000004	7
CGACATA	25	3.8891194E-5	45.000004	34
GCCGATA	25	3.8891194E-5	45.000004	9
GCGCTAG	35	1.2109558E-7	45.000004	1
GTCGACC	20	7.031254E-4	45.0	11
TTGTGCG	55	1.8189894E-12	45.0	1
CCGATAC	20	7.031254E-4	45.0	10
CGTGCAA	20	7.031254E-4	45.0	41
CACAGCG	20	7.031254E-4	45.0	1
ATGAACG	20	7.031254E-4	45.0	1
TAAGGCG	20	7.031254E-4	45.0	1
GCCGATG	80	0.0	42.1875	9
GGCCGAT	125	0.0	41.399998	8
TTTAGCG	50	1.0804797E-9	40.500004	1
AACTACG	50	1.0804797E-9	40.500004	1
ACGGGAT	150	0.0	40.5	5
TCGGCGT	180	0.0	40.0	4
TTGCGAG	45	1.9263098E-8	40.0	1
CAAACGG	40	3.4554432E-7	39.375	2
ATTACGG	75	0.0	39.0	2