SRR3552498_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552498_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	266024
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	3022	1.1359877304303372	No Hit
CTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCT	1973	0.7416624063994226	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	1585	0.5958109042793132	No Hit
TCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	1348	0.5067211980873906	No Hit
TGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCTT	1243	0.46725107509096925	Illumina Single End Adapter 2 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCC	810	0.3044838059723935	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	795	0.2988452169729047	No Hit
ACTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	750	0.28192944997443836	No Hit
GCCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTG	529	0.19885423871530386	No Hit
AGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTG	464	0.17442035305085254	No Hit
GGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTG	444	0.16690223438486754	No Hit
ACCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTG	333	0.12517667578865063	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTC	321	0.12066580458905965	No Hit
GGCCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCT	311	0.11690674525606712	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCG	299	0.1123958740564761	No Hit
TGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTG	286	0.10750909692358583	No Hit
GACCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCT	286	0.10750909692358583	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTA	30	2.1591914E-6	45.000004	5
GCGTCCC	30	2.1591914E-6	45.000004	7
AAGTACG	20	7.023503E-4	45.0	1
TCCGCGG	20	7.023503E-4	45.0	2
GGTAACT	25	3.8826973E-5	45.0	8
ACGGGAC	45	3.8198777E-10	45.0	5
TTGACCC	25	3.8826973E-5	45.0	8
TGTTACG	25	3.8826973E-5	45.0	1
GCGATGT	25	3.8826973E-5	45.0	9
AGGGCGC	20	7.023503E-4	45.0	6
CGTTTGG	45	3.8198777E-10	45.0	2
GGAACAC	70	0.0	41.785717	8
TACGGGA	50	1.0750227E-9	40.5	4
CGGGATA	50	1.0750227E-9	40.5	6
AGTACGG	50	1.0750227E-9	40.5	2
CGTTTTT	545	0.0	40.458717	1
GAGCGAC	45	1.91867E-8	40.0	18
TCGAAGG	45	1.91867E-8	40.0	2
CAGGGGT	130	0.0	39.807693	5
GACGGGA	85	0.0	39.705883	4