SRR3552496_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552496_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	370285
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC	4303	1.162077858946487	No Hit
CTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT	2392	0.6459889004415518	No Hit
TGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCTT	1652	0.4461428359236804	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC	1621	0.43777090619387765	No Hit
CCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC	1500	0.4050933740227122	No Hit
ACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC	1042	0.28140486382111074	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCC	749	0.20227662476200764	No Hit
AGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG	680	0.18364232955696289	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	651	0.17581052432585711	No Hit
GCCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG	558	0.15069473513644896	No Hit
GGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG	555	0.1498845483884035	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	543	0.14664380139622182	No Hit
GACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCT	437	0.11801720296528351	No Hit
AAGGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC	421	0.11369620697570791	No Hit
TGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG	395	0.10667458849264756	No Hit
ACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG	394	0.10640452624329907	No Hit
GGCCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCT	373	0.10073321900698111	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAATTC	35	1.2089367E-7	45.000004	35
TACCCTA	20	7.0270855E-4	45.0	15
TCGCAAA	20	7.0270855E-4	45.0	35
CCCTATT	20	7.0270855E-4	45.0	17
GAATAAG	25	3.8856662E-5	45.0	1
TCTAGAG	20	7.0270855E-4	45.0	1
CACTAGG	20	7.0270855E-4	45.0	2
TACGACA	25	3.8856662E-5	45.0	32
ACGGATG	20	7.0270855E-4	45.0	1
CATACGA	40	6.7939254E-9	45.0	18
CCAAGCG	20	7.0270855E-4	45.0	20
TAGGACG	20	7.0270855E-4	45.0	1
GCTAATG	20	7.0270855E-4	45.0	1
CGCCGGT	45	3.8380676E-10	45.0	28
CGCAAAC	20	7.0270855E-4	45.0	36
TGAGCGT	20	7.0270855E-4	45.0	16
TCGCGAG	20	7.0270855E-4	45.0	1
ACGACAA	25	3.8856662E-5	45.0	33
GTTGCGC	20	7.0270855E-4	45.0	28
TAGCGAG	30	2.1615015E-6	44.999996	1