SRR3552494_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552494_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	879697
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	5543	0.6301033196657485	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	3428	0.38967962832657155	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	3152	0.3583051891730903	No Hit
TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	2348	0.26691008381294923	No Hit
TGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCTT	1985	0.22564587579587062	Illumina Single End Adapter 1 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	1436	0.16323802400144596	No Hit
AGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	897	0.10196692724881408	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTAACG	35	1.2115015E-7	45.000004	1
GGATCGA	25	3.890056E-5	45.0	8
CGTCTAG	20	7.032383E-4	45.0	29
TAACGCG	25	3.890056E-5	45.0	1
TAACGAC	20	7.032383E-4	45.0	11
TTATCCG	20	7.032383E-4	45.0	1
TCGGCGT	50	2.1827873E-11	45.0	4
ATCGTAA	20	7.032383E-4	45.0	20
TACGCTA	20	7.032383E-4	45.0	34
CGCTACA	40	6.8121153E-9	45.0	28
TTGCGAG	45	3.8380676E-10	45.0	1
CGACTCG	20	7.032383E-4	45.0	2
TCGACAC	25	3.890056E-5	45.0	34
ATCATCG	20	7.032383E-4	45.0	17
GCCGTAC	20	7.032383E-4	45.0	27
TGCGTGA	20	7.032383E-4	45.0	38
ACGCGTA	20	7.032383E-4	45.0	23
ATCACGG	70	0.0	41.785717	2
GCAACGA	60	3.6379788E-12	41.249996	11
CGCGCAA	60	3.6379788E-12	41.249996	18