SRR3552482_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552482_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	475956
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	2599	0.5460588793922128	No Hit
CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCT	1889	0.39688542638395147	No Hit
CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	1867	0.3922631503752448	No Hit
TGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGCTT	1265	0.26578087050063454	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	999	0.20989335148627183	No Hit
ACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	869	0.18257990234391414	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCC	822	0.17270503996167713	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	762	0.16009883266520436	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	509	0.10694265856507745	No Hit
AGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTG	499	0.10484162401566532	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTAA	20	7.029118E-4	45.0	15
CACGGAT	20	7.029118E-4	45.0	4
GCGGTCA	20	7.029118E-4	45.0	5
ACCTGCG	25	3.88735E-5	45.0	11
GTGGCGT	40	6.8012014E-9	45.0	34
CGTTCGC	25	3.88735E-5	45.0	45
TCTAGCG	40	6.8012014E-9	45.0	1
TATTGCG	20	7.029118E-4	45.0	1
GCCGATA	20	7.029118E-4	45.0	8
GTATGCG	45	3.8380676E-10	45.0	1
ATGCGGT	25	3.88735E-5	45.0	3
CGTCATG	20	7.029118E-4	45.0	36
TGTAACG	25	3.88735E-5	45.0	1
CAATAGC	25	3.88735E-5	45.0	34
CGAATAT	85	0.0	42.352943	14
TACGAAA	70	0.0	41.785713	19
ATACGAA	70	0.0	41.785713	18
GGCGATA	165	0.0	40.909092	7
ACGGAGT	50	1.0786607E-9	40.5	5
TTGCGAG	50	1.0786607E-9	40.5	1