SRR3552466_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552466_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1273635
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	7525	0.5908286125930899	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	7519	0.5903575200116202	No Hit
CTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGCT	5564	0.4368598538827843	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	3360	0.26381184562296106	No Hit
ACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	2339	0.18364759134288866	No Hit
GCCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTG	1619	0.12711648156653987	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1430	0.1122770652502483	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTG	1403	0.11015714863363522	No Hit
ACCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTG	1360	0.10678098513310329	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTCC	25	3.891043E-5	45.000004	11
GTTAGTC	20	7.0335733E-4	45.000004	30
GCCGATA	50	2.1827873E-11	45.000004	9
TCGCTAG	40	6.8157533E-9	45.000004	1
AACGCAT	20	7.0335733E-4	45.000004	13
CGAATTA	25	3.891043E-5	45.000004	14
CATCGTA	25	3.891043E-5	45.000004	11
TTAGTCG	20	7.0335733E-4	45.000004	1
GACGAAC	25	3.891043E-5	45.000004	9
TACGTTG	25	3.891043E-5	45.000004	1
ATACACG	20	7.0335733E-4	45.000004	1
TAACTAC	20	7.0335733E-4	45.000004	33
ACGCGTA	40	6.8157533E-9	45.000004	23
TCCCGTA	60	3.6379788E-12	41.250004	25
GCTACGA	175	0.0	41.142857	10
TACGAAT	170	0.0	41.02941	12
TAGTTAG	110	0.0	40.909092	1
ATATGCG	165	0.0	40.90909	1
CATACGC	50	1.0822987E-9	40.500004	20
TGATTCG	45	1.9286745E-8	40.0	15