SRR3552464_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552464_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1657342
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTGC	5579	0.3366233402641096	No Hit
CTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTGCT	3292	0.19863130241072752	No Hit
CCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTGC	2862	0.17268614444091807	No Hit
TCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTGC	2259	0.13630258570651077	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACAAA	20	7.0341915E-4	45.0	11
ATTCACG	25	3.8915554E-5	45.0	1
TTGTTCG	20	7.0341915E-4	45.0	15
GTATACG	60	3.6379788E-12	41.250004	1
TCGAACG	60	3.6379788E-12	41.250004	1
ACGGGTA	210	0.0	39.642857	5
TATTACG	40	3.4594632E-7	39.375	1
TATAGCG	80	0.0	39.375	1
TCGACGT	40	3.4594632E-7	39.375	26
ATTACGG	180	0.0	38.75	2
TTAACGG	100	0.0	38.25	2
TTGGACG	95	0.0	37.894737	1
AGTACGG	95	0.0	37.894737	2
CGTACTG	30	1.1401393E-4	37.500004	17
TATCGGC	30	1.1401393E-4	37.500004	28
CGAATAT	150	0.0	37.5	14
AACACGT	500	0.0	36.899998	41
AGGGATC	745	0.0	36.543625	6
CGTTAGG	255	0.0	36.17647	2
CTCCGAT	25	0.002107377	36.0	19