SRR3552456_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552456_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2124249
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	7715	0.3631871781509607	TruSeq Adapter, Index 20 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGCT	5168	0.24328598012756508	TruSeq Adapter, Index 22 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	4393	0.20680249820054053	TruSeq Adapter, Index 20 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	3321	0.15633760448986914	TruSeq Adapter, Index 20 (95% over 23bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	2685	0.1263976115794335	No Hit
ACTGTCTCTTATACACATCTGACGCACACCTTGTCGTATGCCGTCTTCTGC	2256	0.10620223900305473	TruSeq Adapter, Index 22 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATCG	25	3.8919272E-5	45.0	45
ATCGTGT	25	3.8919272E-5	45.0	43
CATACCG	25	3.8919272E-5	45.0	39
TAGTCGA	25	3.8919272E-5	45.0	24
TGCGTAG	95	0.0	45.0	1
CTAACGG	185	0.0	40.135136	2
GTGCGAT	45	1.929584E-8	40.0	12
TTAATCG	75	0.0	39.000004	20
GGACGTA	35	6.2507934E-6	38.571426	8
CGAACGC	30	1.1402478E-4	37.500004	11
ATTAGCG	145	0.0	37.24138	1
ACGCATT	85	0.0	37.058826	17
AGGGCGC	330	0.0	36.818184	6
GTTCACG	55	2.752131E-9	36.81818	1
AACACGT	485	0.0	36.649483	41
GACACGA	530	0.0	36.509434	25
AAGGGCG	870	0.0	36.206898	5
ACACGAC	535	0.0	36.168224	26
ATAGGGA	1340	0.0	36.100746	4
GTATGCG	100	0.0	36.0	1