SRR3552454_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552454_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1241117
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCTGC	4073	0.3281721223704131	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCTGC	2792	0.22495864612280708	No Hit
CTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCTGCT	2610	0.21029443638271011	No Hit
TCTGTCTCTTATACACATCTGACGCGGTTGCAATCGTATGCCGTCTTCTGC	1717	0.1383431215590472	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTAAG	125	0.0	45.000004	1
CGTAGAA	20	7.033504E-4	45.0	38
TAGATCG	20	7.033504E-4	45.0	1
CGTAAGT	20	7.033504E-4	45.0	5
TATAGCG	70	0.0	45.0	1
ACGTAAC	20	7.033504E-4	45.0	38
TACAGCG	35	1.212029E-7	45.0	1
TAGCACG	25	3.8909875E-5	44.999996	1
CCGAACT	25	3.8909875E-5	44.999996	17
ATACGAG	25	3.8909875E-5	44.999996	1
AATTGCG	120	0.0	43.125004	1
ACTTGCG	50	1.0822987E-9	40.499996	1
CGCTACA	50	1.0822987E-9	40.499996	28
ACGTCTT	50	1.0822987E-9	40.499996	28
GTCGATG	45	1.9284926E-8	40.000004	1
ACGTTAC	40	3.4585173E-7	39.375	15
AGTACGG	115	0.0	39.130432	2
TGTCGAC	35	6.2486943E-6	38.571426	12
GTTAACG	95	0.0	37.894737	1
GGACCGT	30	1.13997434E-4	37.500004	8