SRR3552442_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552442_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1222786
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	7285	0.595770641796684	No Hit
CCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	5323	0.4353173817822579	No Hit
CTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCT	4409	0.36057004250948244	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	2912	0.23814469580122768	No Hit
ACTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	1901	0.15546465203232618	No Hit
GCCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTG	1438	0.11760029964360078	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1340	0.10958581468875174	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1232	0.10075352514667325	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACG	20	7.033463E-4	45.000004	1
TACGATC	20	7.033463E-4	45.000004	11
CGTAAGG	160	0.0	45.000004	2
CGTATCG	25	3.890953E-5	45.0	2
GATCGAC	25	3.890953E-5	45.0	10
TTCGTCG	25	3.890953E-5	45.0	1
ATTAGTC	175	0.0	42.42857	31
CACAACG	655	0.0	41.221375	12
TTAGTCA	170	0.0	41.02941	32
GTATGCG	50	1.0822987E-9	40.5	1
TATTAGT	185	0.0	40.135136	30
CGTATTA	40	3.4584627E-7	39.375004	17
GTTAACG	40	3.4584627E-7	39.375004	1
CCGAACG	40	3.4584627E-7	39.375004	1
TCAACGG	80	0.0	39.375004	2
AACGAGC	710	0.0	38.66197	15
GCCGATA	70	0.0	38.57143	9
TGTTACG	70	0.0	38.57143	1
TCGATCA	125	0.0	37.800003	17
AACACGT	435	0.0	37.75862	41