SRR3552439_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552439_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1418925
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	6027	0.4247581796078017	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGCT	3995	0.2815511743044911	Illumina Single End Adapter 1 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	3431	0.24180277322621	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	2618	0.18450587592719842	Illumina Single End Adapter 1 (95% over 21bp)
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	2069	0.14581461317546734	No Hit
ACTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	1770	0.12474232253290345	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTCCA	20	7.033846E-4	45.000004	20
TTAACGG	85	0.0	42.35294	2
TATTGCG	60	3.6379788E-12	41.249996	1
TAAACGG	80	0.0	39.375004	2
TATCGCG	40	3.4589902E-7	39.375004	1
TGCGTAG	80	0.0	39.375004	1
TTTAGCG	120	0.0	39.374996	1
TAATACG	35	6.2493255E-6	38.571426	1
CTATACG	35	6.2493255E-6	38.571426	1
CCCTCGT	325	0.0	38.07692	14
CGTAAGG	290	0.0	38.017242	2
TATACGG	95	0.0	37.894737	2
CACAACG	395	0.0	37.594936	12
TCGTTAG	60	1.5643309E-10	37.499996	1
CGAACTA	30	1.14005714E-4	37.499996	30
CCGTAAG	30	1.14005714E-4	37.499996	1
TCGTAAG	60	1.5643309E-10	37.499996	1
GTATACG	30	1.14005714E-4	37.499996	1
TATAGCG	30	1.14005714E-4	37.499996	1
TCGACGC	30	1.14005714E-4	37.499996	17