SRR3552437_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552437_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	775391
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	7007	0.9036731145963779	No Hit
CCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	4959	0.6395483053066131	No Hit
CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT	4633	0.5975050007028712	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	2979	0.3841932650752975	No Hit
ACTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	1930	0.24890668062951463	No Hit
GCCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTG	1418	0.18287547830707346	No Hit
ACCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTG	1045	0.13477071567763876	No Hit
AGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTG	980	0.1263878481952976	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	968	0.12484024189086539	No Hit
CGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTG	921	0.11877878386517254	No Hit
GGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTG	909	0.11723117756074032	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTCA	20	7.031864E-4	45.000004	16
CGAACCG	20	7.031864E-4	45.000004	26
CAACGTG	20	7.031864E-4	45.000004	3
TTTACGC	20	7.031864E-4	45.000004	36
ACCGAGT	20	7.031864E-4	45.000004	19
CACGCAA	20	7.031864E-4	45.000004	40
TATGCGC	20	7.031864E-4	45.000004	38
ATCGTCA	30	2.1645847E-6	45.000004	37
TAACCGA	20	7.031864E-4	45.000004	17
ACGGCAC	20	7.031864E-4	45.000004	28
TCGCTAG	20	7.031864E-4	45.000004	2
TCGTCAA	30	2.1645847E-6	45.000004	38
CGAATAT	60	0.0	45.000004	14
GTATACG	30	2.1645847E-6	45.000004	1
CGATCCA	20	7.031864E-4	45.000004	10
ATGCACG	20	7.031864E-4	45.000004	1
GGTTACG	55	1.8189894E-12	45.000004	1
TCGCGAT	20	7.031864E-4	45.000004	23
AGTCGTT	20	7.031864E-4	45.000004	23
TACGTAG	20	7.031864E-4	45.000004	1