SRR3552429_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552429_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1180212
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	5481	0.4644080893941089	No Hit
CCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	4808	0.4073844360165801	No Hit
CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT	4034	0.34180299810542514	No Hit
TCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	3145	0.2664775481015275	No Hit
ACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC	2024	0.1714946128322708	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1998	0.1692916187939116	No Hit
GCCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG	1529	0.1295529955635089	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1392	0.11794491159215464	No Hit
ACCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG	1213	0.10277814494345085	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGGT	35	1.2119563E-7	45.000004	4
TCGATTG	25	3.890869E-5	45.000004	1
TACGCAA	25	3.890869E-5	45.000004	28
TGCGATA	25	3.890869E-5	45.000004	39
GCGATAT	35	1.2119563E-7	45.000004	9
TTAACGG	25	3.890869E-5	45.000004	2
CAATACG	25	3.890869E-5	45.000004	1
ACCTTAC	25	3.890869E-5	45.000004	24
AGTCGAC	25	3.890869E-5	45.000004	18
CGTGCAT	20	7.0333644E-4	45.0	18
ATTACGC	20	7.0333644E-4	45.0	26
TAGCGAT	20	7.0333644E-4	45.0	11
ATATGCG	40	6.8157533E-9	45.0	1
CTGCGTA	20	7.0333644E-4	45.0	18
ACGATAG	40	6.8157533E-9	45.0	1
AACGCAT	20	7.0333644E-4	45.0	15
ATAACGG	45	3.8562575E-10	45.0	2
ATGCACG	40	6.8157533E-9	45.0	1
TATCGAG	20	7.0333644E-4	45.0	1
TAATGCG	20	7.0333644E-4	45.0	1