SRR3552427_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552427_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	895618
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	6848	0.7646116982910125	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	5678	0.6339756458668763	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	4290	0.4789988588884993	No Hit
TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	2814	0.3141964542918968	No Hit
ACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	1867	0.2084594101503096	No Hit
GCCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	1493	0.1667005352728507	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1375	0.15352527528477544	No Hit
ACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	1120	0.12505331514105344	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	987	0.11020323396805334	No Hit
GGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	960	0.10718855583518867	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGAT	20	7.0324505E-4	45.000004	27
ACGCATA	40	6.8121153E-9	45.000004	31
ATTCGGA	20	7.0324505E-4	45.000004	22
CGCGACA	20	7.0324505E-4	45.000004	35
CCCGTTG	20	7.0324505E-4	45.000004	18
TGCGCTA	20	7.0324505E-4	45.000004	2
TATTACG	20	7.0324505E-4	45.000004	1
ACGCTAT	20	7.0324505E-4	45.000004	43
TCCCGTT	20	7.0324505E-4	45.000004	17
TACTCGC	20	7.0324505E-4	45.000004	45
ATGCGTC	20	7.0324505E-4	45.000004	12
TATAGCG	20	7.0324505E-4	45.000004	1
TATACGG	40	6.8121153E-9	45.000004	2
TCGAACG	20	7.0324505E-4	45.000004	1
TAGTACG	20	7.0324505E-4	45.000004	36
CGCATCC	35	1.2115197E-7	45.0	11
ATTCGTG	25	3.8901144E-5	45.0	1
GATATAC	25	3.8901144E-5	45.0	9
TTGCGAC	25	3.8901144E-5	45.0	2
CGACGGA	30	2.164963E-6	44.999996	17