SRR3552420_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552420_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	895195
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	5360	0.5987522271683823	No Hit
CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT	5355	0.5981936896430387	No Hit
CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	4707	0.5258072263585029	No Hit
TCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	2774	0.3098766190606516	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1930	0.21559548478264512	No Hit
ACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	1778	0.19861594401219848	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1448	0.1617524673395182	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1363	0.1522573294086763	No Hit
GCCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTG	1172	0.13092119594054927	No Hit
CGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTG	1094	0.12220801054518848	No Hit
ACCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTG	1046	0.11684605030188952	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCC	1000	0.11170750506872805	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	20	7.0324494E-4	45.0	1
CAAACGG	25	3.890112E-5	45.0	2
TAGGTCG	25	3.890112E-5	45.0	1
TAACGCG	35	1.2115197E-7	45.0	1
CATAGTA	20	7.0324494E-4	45.0	41
ACAATCG	25	3.890112E-5	45.0	2
CGTACTT	20	7.0324494E-4	45.0	28
ACTCGAA	20	7.0324494E-4	45.0	22
ACGTACT	20	7.0324494E-4	45.0	27
GATCTCG	35	1.2115197E-7	45.0	10
ATACGCG	20	7.0324494E-4	45.0	1
TCGAATC	20	7.0324494E-4	45.0	24
GTAGTAC	20	7.0324494E-4	45.0	36
ATCGTAG	30	2.1649612E-6	44.999996	1
CGAATAT	105	0.0	42.857143	14
ACAATAG	85	0.0	42.352943	11
AGTACGG	75	0.0	42.0	2
GTTAGCG	70	0.0	41.785713	1
ATTGGGT	55	6.002665E-11	40.909092	4
ATAGTGT	110	0.0	40.909092	11