##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552412_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 790240 Sequences flagged as poor quality 0 Sequence length 51 %GC 33 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.203911469933185 31.0 31.0 34.0 28.0 34.0 2 31.44845110346224 31.0 31.0 34.0 30.0 34.0 3 31.108496153067424 31.0 31.0 34.0 28.0 34.0 4 35.17251088276979 37.0 35.0 37.0 32.0 37.0 5 35.05691562057097 35.0 35.0 37.0 32.0 37.0 6 35.14991901194574 37.0 35.0 37.0 32.0 37.0 7 35.05700167037862 37.0 35.0 37.0 32.0 37.0 8 34.719552287912535 36.0 35.0 37.0 31.0 37.0 9 36.106101943713306 38.0 35.0 39.0 31.0 39.0 10 36.58200926300871 38.0 35.0 39.0 32.0 39.0 11 36.448621937639196 38.0 35.0 39.0 32.0 39.0 12 36.47412558210164 38.0 35.0 39.0 32.0 39.0 13 36.215639552541 38.0 35.0 39.0 31.0 39.0 14 37.48313929945333 39.0 36.0 41.0 32.0 41.0 15 37.413480714719576 39.0 36.0 41.0 32.0 41.0 16 37.40129580886819 39.0 36.0 41.0 32.0 41.0 17 37.11338454140514 39.0 36.0 40.0 31.0 41.0 18 36.57583392387123 38.0 36.0 40.0 31.0 41.0 19 35.99177465073902 37.0 35.0 40.0 30.0 41.0 20 35.34368293176757 35.0 34.0 40.0 29.0 41.0 21 35.46715807855841 35.0 34.0 40.0 30.0 41.0 22 35.49578862117838 35.0 34.0 40.0 30.0 41.0 23 35.1647271714922 35.0 34.0 40.0 29.0 41.0 24 35.07407369912938 35.0 33.0 40.0 28.0 41.0 25 35.12010908078558 35.0 33.0 40.0 29.0 41.0 26 35.019873709252884 35.0 33.0 40.0 28.0 41.0 27 34.7976829823851 35.0 33.0 40.0 27.0 41.0 28 34.71745672200851 35.0 33.0 40.0 26.0 41.0 29 34.700031635958695 35.0 33.0 40.0 25.0 41.0 30 34.53562841668354 35.0 33.0 40.0 25.0 41.0 31 34.416174832962135 35.0 33.0 40.0 25.0 41.0 32 33.99369052439765 35.0 33.0 40.0 23.0 41.0 33 33.783206367685764 35.0 33.0 39.0 22.0 41.0 34 33.586826786798945 35.0 33.0 39.0 21.0 41.0 35 33.37245773435918 35.0 33.0 39.0 21.0 41.0 36 33.3265843288115 35.0 33.0 39.0 21.0 41.0 37 33.25016830330026 35.0 33.0 39.0 21.0 41.0 38 33.16073724438145 35.0 33.0 39.0 20.0 41.0 39 33.04854854221502 35.0 33.0 39.0 20.0 41.0 40 32.850984511034625 35.0 33.0 39.0 18.0 41.0 41 32.671980664102044 35.0 32.0 39.0 18.0 41.0 42 32.67208822636161 35.0 32.0 39.0 18.0 41.0 43 32.53730385705608 35.0 32.0 39.0 18.0 40.0 44 32.476200900992104 35.0 32.0 39.0 17.0 40.0 45 32.417966693662684 35.0 31.0 39.0 18.0 40.0 46 32.25833923871229 35.0 31.0 39.0 17.0 40.0 47 31.9712732840656 35.0 31.0 38.0 15.0 40.0 48 31.907173769993925 35.0 31.0 38.0 15.0 40.0 49 31.790010629682122 35.0 31.0 38.0 15.0 40.0 50 31.599557096578256 35.0 31.0 38.0 12.0 40.0 51 30.67345743065398 35.0 28.0 37.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 17.0 9 41.0 10 77.0 11 102.0 12 79.0 13 63.0 14 55.0 15 97.0 16 210.0 17 436.0 18 956.0 19 1761.0 20 2992.0 21 4456.0 22 6527.0 23 8462.0 24 10935.0 25 14145.0 26 17566.0 27 19432.0 28 20648.0 29 23117.0 30 26982.0 31 33167.0 32 41785.0 33 53217.0 34 72840.0 35 127216.0 36 65554.0 37 66812.0 38 88664.0 39 81826.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.26609637578457 27.802945940473776 12.032420530471756 26.898537153269892 2 34.087239319700345 44.43612067220085 12.598324559627455 8.878315448471351 3 16.02867483296214 44.2082152257542 31.091693662684754 8.671416278598906 4 13.85452520753189 35.33154484713505 40.80886819194169 10.005061753391374 5 18.792645272322332 36.38046669366268 31.142690828102854 13.684197205912128 6 13.55385705608423 44.091541810083015 32.47949989876493 9.875101235067827 7 40.63107410406965 25.01569143551326 28.785432273739627 5.567802186677465 8 39.113560437335494 29.619229601133835 25.13236485118445 6.134845110346224 9 36.65810386717959 25.393677870014177 24.56380340149828 13.384414861307958 10 23.076154079773232 34.05535027333468 29.824357157319298 13.044138489572788 11 18.116141931565092 34.716288722413445 31.20014172909496 15.967427616926502 12 14.157597691840454 34.05826078153472 35.520727880137684 16.263413646487145 13 13.654839036242155 35.42354221502328 38.622317270702574 12.29930147803199 14 11.982815347236283 40.86505365458595 32.61452217047985 14.537608827697914 15 10.116673415671189 37.97352702976311 38.43490585138692 13.47489370317878 16 11.04259465478842 40.52224640615509 30.999316663292163 17.435842275764323 17 10.92592123911723 39.82600222717149 32.48848451103462 16.759592022676657 18 11.121558007693865 40.488838833772014 31.048036039684145 17.34156711884997 19 11.35566410204495 40.88897043936019 29.56152561247216 18.193839846122696 20 12.683108928932981 40.72041405142742 32.21869305527434 14.377783964365257 21 12.52783964365256 42.699686171289734 30.856195586151042 13.916278598906661 22 11.430831139906864 37.80648916784774 31.4572788013768 19.305400890868597 23 12.837745495039481 41.12358270905042 31.174832962138083 14.86383883377202 24 15.21727576432476 38.19839542417493 28.600425187284877 17.98390362421543 25 13.302414456367687 43.5143753796315 27.647929742862924 15.535280421137882 26 14.044594047378013 37.39661368698117 29.799301478031992 18.75949078760883 27 16.98129682121887 38.46363130188297 27.594907876088275 16.96016400080988 28 12.97352702976311 37.28981069042317 31.406408179793484 18.330254100020245 29 16.309728690018222 35.896309981777684 30.69763616116623 17.09632516703786 30 16.387426604575825 37.93265337112776 30.839871431463862 14.840048592832558 31 15.871127758655598 36.424883579672 28.073623203077545 19.630365458594856 32 16.120419113180805 40.851133832759665 27.779535331038673 15.248911723020855 33 14.495343186879936 36.148511844502934 30.038848957278802 19.31729601133833 34 13.962846730107309 36.63519943308362 33.21775663089694 16.184197205912128 35 15.957683741648108 35.65068839846123 29.281863737598705 19.10976412229196 36 17.552642235270298 35.33635351285685 30.11275055679287 16.998253695079978 37 16.59052945940474 37.59300971856651 30.00949078760883 15.806970034419923 38 15.043404535331039 36.822990483903624 28.706468920834176 19.42713605993116 39 17.192751569143553 37.425718768981575 30.88593338732537 14.495596274549506 40 14.684146588378214 35.41101437537963 33.336075116420325 16.568763919821826 41 16.016273537153268 37.49544442194776 30.04947863940069 16.438803401498276 42 15.601715934399676 35.82810285482891 31.500936424377407 17.069244786394005 43 19.116217857865962 35.093895525410005 28.457810285482893 17.33207633124114 44 16.485877708038064 34.39043834784369 29.955076938651548 19.168607005466693 45 16.32795100222717 33.17055578052237 28.754555578052237 21.74693763919822 46 19.122671593439968 35.24676047782952 28.339238712289937 17.291329216440577 47 13.790240939461428 33.783154484713506 34.96962947965175 17.456975096173313 48 15.356347438752785 34.89382972261591 30.186019437133023 19.563803401498276 49 14.163545252075318 33.00263211176351 34.98063879327799 17.853183842883176 50 14.876493217250456 32.12694877505568 33.27065195383681 19.725906053857056 51 14.141146993318484 32.30967807248431 31.149777282850778 22.399397651346426 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 104411.0 1 71504.5 2 38598.0 3 55781.5 4 72965.0 5 43668.5 6 14372.0 7 11538.5 8 8705.0 9 8271.0 10 7837.0 11 7509.0 12 7181.0 13 6860.5 14 6540.0 15 6078.5 16 5617.0 17 5245.5 18 4874.0 19 4431.5 20 3989.0 21 3707.0 22 3425.0 23 3309.5 24 3194.0 25 3519.0 26 4043.5 27 4243.0 28 4907.0 29 5571.0 30 6134.5 31 6698.0 32 6769.5 33 6841.0 34 8016.0 35 9191.0 36 9986.0 37 10781.0 38 11688.5 39 12596.0 40 14791.5 41 16987.0 42 22157.0 43 27327.0 44 34905.5 45 42484.0 46 79884.0 47 117284.0 48 85376.0 49 53468.0 50 49520.0 51 45572.0 52 36116.0 53 26660.0 54 23950.0 55 21240.0 56 20082.0 57 18924.0 58 17740.5 59 16557.0 60 16159.0 61 15761.0 62 14429.5 63 13098.0 64 11409.0 65 9720.0 66 8926.5 67 8133.0 68 6818.0 69 5503.0 70 4639.5 71 3776.0 72 3206.5 73 2637.0 74 2100.5 75 1277.5 76 991.0 77 806.0 78 621.0 79 426.5 80 232.0 81 173.5 82 115.0 83 94.5 84 74.0 85 47.0 86 20.0 87 14.0 88 8.0 89 6.5 90 5.0 91 3.5 92 2.0 93 1.0 94 0.0 95 1.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 790240.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.900119834551518 #Duplication Level Percentage of deduplicated Percentage of total 1 79.68087745918913 19.043825197968353 2 7.31035925503596 3.494369244579645 3 2.7683340914552064 1.9849054958356118 4 1.5204596233216212 1.453566688039352 5 1.0898624832459074 1.3023921976379544 6 0.8199991766558676 1.175884715178529 7 0.643429843471022 1.0764635254858903 8 0.5244511829443281 1.0027556895793395 9 0.45818025004234614 0.9855506593653166 >10 4.971200580470088 22.788412110512603 >50 0.10882354649218635 1.7849284915577424 >100 0.07308247975210512 3.552517677768908 >500 0.013336218932865896 2.018244144382781 >1k 0.012269321418236626 7.9938022494413135 >5k 0.0021337950292585435 3.21312627458843 >10k+ 0.0032006925438878148 27.12925563807826 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 96893 12.261211783761896 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 56456 7.144158736586354 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTC 20885 2.642867989471553 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 14236 1.8014780319902814 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCG 12204 1.544340959708443 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGC 12113 1.5328254707430653 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCT 8504 1.0761287710062766 No Hit GAACTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCT 6076 0.7688803401498279 No Hit CGCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTG 5598 0.7083923871228994 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTC 5024 0.6357562259566715 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCC 4777 0.6044998987649322 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTT 4554 0.5762806236080178 No Hit CGTCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCT 4446 0.562613889451306 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3905 0.49415367483296213 No Hit GCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC 3796 0.4803603968414659 No Hit CTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGCT 3356 0.42468110953634336 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCT 3318 0.4198724438145373 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3171 0.4012705001012351 No Hit GAATGCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTT 3015 0.38152966187487347 No Hit CGTTTTTTCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGT 2832 0.3583721401093339 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCG 2760 0.3492609840048593 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTC 2753 0.3483751771613687 No Hit CCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC 2718 0.3439461429439158 No Hit CGTTCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTC 2575 0.32585037456975097 No Hit AAAACTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTC 2386 0.30193358979550516 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCATTCGTCGTA 2118 0.2680198420732942 No Hit GAAAACTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTT 1849 0.23397955051629882 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1846 0.23359991901194577 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGC 1765 0.22334986839441184 No Hit AAAAACTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTT 1275 0.16134338935007086 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCATTCGT 1247 0.15780016197610852 No Hit AAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1203 0.15223223324559626 No Hit CATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1034 0.13084632516703787 No Hit GAAACTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTC 894 0.11313018829722617 No Hit AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 815 0.10313322534926098 No Hit ACTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC 811 0.10262705001012351 No Hit CTGAATGATACCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGC 808 0.10224741850577039 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4869406762502531 0.0 2 0.0 0.0 0.0 1.5867331443612067 0.0 3 0.0 0.0 0.0 2.580102247418506 0.0 4 0.0 0.0 0.0 4.300212593642438 0.0 5 0.0 0.0 0.0 8.48501720996153 0.0 6 0.0 0.0 0.0 10.65081494229601 0.0 7 0.0 0.0 0.0 12.941005264223527 0.0 8 0.0 0.0 0.0 14.640488965377607 0.0 9 0.0 0.0 0.0 15.364319700344199 0.0 10 0.0 0.0 0.0 17.980360396841466 0.0 11 0.0 0.0 0.0 19.24491293784167 0.0 12 0.0 0.0 0.0 21.839314638590807 0.0 13 0.0 0.0 0.0 22.328659647701965 0.0 14 0.0 0.0 0.0 22.63173213201053 0.0 15 0.0 0.0 0.0 23.129302490382667 0.0 16 0.0 0.0 0.0 23.51374266045758 0.0 17 0.0 0.0 0.0 23.847818384288317 0.0 18 0.0 0.0 0.0 24.195560842275764 0.0 19 0.0 0.0 0.0 24.610244988864142 0.0 20 0.0 0.0 0.0 24.84624924073699 0.0 21 0.0 0.0 0.0 25.073775055679288 0.0 22 0.0 0.0 0.0 25.330405952621987 0.0 23 0.0 0.0 0.0 25.5392032800162 0.0 24 0.0 0.0 0.0 25.713580684349058 0.0 25 0.0 0.0 0.0 25.879226564081797 0.0 26 0.0 0.0 0.0 26.031585341162177 0.0 27 0.0 0.0 0.0 26.197737396234057 0.0 28 0.0 0.0 0.0 26.348830734966594 0.0 29 0.0 0.0 0.0 26.510047580481878 0.0 30 0.0 0.0 0.0 26.730360396841466 0.0 31 0.0 0.0 0.0 26.887401295808868 0.0 32 0.0 0.0 0.0 27.044568738611055 0.0 33 0.0 0.0 0.0 27.202115812917594 0.0 34 1.265438347843693E-4 0.0 0.0 27.350172099615307 0.0 35 2.530876695687386E-4 0.0 0.0 27.523030977930755 0.0 36 2.530876695687386E-4 0.0 0.0 27.675642842680706 0.0 37 2.530876695687386E-4 0.0 0.0 27.83977019639603 0.0 38 2.530876695687386E-4 0.0 0.0 28.001746304920026 0.0 39 2.530876695687386E-4 0.0 0.0 28.169416886009312 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTATGC 55 1.8189894E-12 45.000004 8 CGTGTAC 55 1.8189894E-12 45.000004 18 GCCCGAA 35 1.2112832E-7 45.000004 25 GTTAGCG 20 7.031948E-4 45.0 1 CCGTCGA 20 7.031948E-4 45.0 41 CTACGAA 25 3.889696E-5 45.0 11 TACGAAT 25 3.889696E-5 45.0 12 CGCTTGG 20 7.031948E-4 45.0 2 TGCGTAG 25 3.889696E-5 45.0 1 CCTCGAT 30 2.1646374E-6 44.999996 15 CTCGATC 30 2.1646374E-6 44.999996 16 CGTTTAC 30 2.1646374E-6 44.999996 33 CGTTTTT 11875 0.0 44.469475 1 TACGGGA 80 0.0 42.1875 4 CGTCTGT 555 0.0 41.756756 1 CGTTTTC 825 0.0 41.454544 1 CGAAAGG 55 6.002665E-11 40.909092 2 GTGGCGT 55 6.002665E-11 40.909092 34 CACAACG 50 1.0804797E-9 40.5 12 CGTTTCT 470 0.0 40.212765 1 >>END_MODULE