SRR3552403_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552403_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1659954
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	4012	0.24169344451713723	No Hit
CTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGCT	3811	0.22958467523798853	No Hit
CCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	3223	0.19416200689898636	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2366	0.142534070221223	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2296	0.13831708589515132	No Hit
TCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	2209	0.13307597680417652	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCC	2059	0.12403958181973716	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1823	0.10982232037755263	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCCCA	20	7.0341944E-4	45.0	34
CGTAAGG	255	0.0	43.235294	2
TTACGAG	80	0.0	42.1875	1
CCCTCGT	120	0.0	41.249996	14
GCGTAAG	155	0.0	40.64516	1
GCTATCG	45	1.9292202E-8	40.0	1
AGTACGG	160	0.0	39.375	2
CGTTTTT	1955	0.0	37.749363	1
CCGTAAG	60	1.5643309E-10	37.499996	1
TATCGAG	60	1.5643309E-10	37.499996	1
GTTAGCG	145	0.0	37.24138	1
ACAACGG	140	0.0	36.964287	2
ACGTTAG	55	2.750312E-9	36.81818	1
CGAATAT	130	0.0	36.346157	14
TCGATCA	155	0.0	36.29032	17
GCGCCTA	25	0.002107378	36.0	9
CCGCTAA	25	0.002107378	36.0	26
AACGGGA	575	0.0	36.0	4
GCGATAC	75	1.8189894E-12	36.0	9
CAGTCGA	25	0.002107378	36.0	31